View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2752_low_15 (Length: 389)
Name: NF2752_low_15
Description: NF2752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2752_low_15 |
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| [»] scaffold0184 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 15 - 372
Target Start/End: Complemental strand, 52932606 - 52932249
Alignment:
| Q |
15 |
aatcctctacaaaaagaagaagatcatgaacgaaaatgagatgaggtatgtgtttggttacccggtgaaaaagctaaaacgcacgtccatcacctcaaat |
114 |
Q |
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| T |
52932606 |
aatcctctacaaaaagaagaagatcatgaacgaaaatgagatgaggtatgtgtttggttacccggtgaaaaagctaaaacgcacgtccatcacctcaaat |
52932507 |
T |
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| Q |
115 |
gcgattttgctgtgtttggttctccttcacctccttgccgtcatcgtacgttttgctttccaaaatcaattttgggtgaagctctgactcctagcttctg |
214 |
Q |
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| T |
52932506 |
gcgattttgctgtgtttggttctccttcacctccttgccgtcatcgtacgttttgctttccaaaatcaattttgggtgaagctctgactcctagcttctg |
52932407 |
T |
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| Q |
215 |
gaaatcgattttctaaaccgtacttttgattcaatcaatttatctcttttgcccctgtatgtacgagtaaaagggtctgataaaagggatttcaaaaatc |
314 |
Q |
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| T |
52932406 |
gaaatcgattttctaaaccgtacttttgattcaatcaatttctctcttttgcccctgtatgtacgagtaaaagggtctgataaaagggatttcaaaaatc |
52932307 |
T |
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| Q |
315 |
acccattcctttggtttgagaatatgaggagttttgcaatgacattattcctccatag |
372 |
Q |
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| T |
52932306 |
acccattcctttggtttgagaatatgaggagttttgcaatgacattattcctccatag |
52932249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 197
Target Start/End: Complemental strand, 43089733 - 43089601
Alignment:
| Q |
65 |
tgtttggttacccggtgaaaaagctaaaacgcacgtccatcacctcaaatgcgattttgctgtgtttggttctccttcacctccttgccgtcatcgtacg |
164 |
Q |
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| T |
43089733 |
tgtttggttacccggtgagaaatcaaaaacgtgcgttcgtccagtcaaaagtgatttttttgtgtttggttctcctcaacctctctaccatcaccgcacg |
43089634 |
T |
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| Q |
165 |
ttttgctttccaaaatcaattttgggtgaagct |
197 |
Q |
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| T |
43089633 |
ttttccttttcataatcaattttaggtgaagct |
43089601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 63 - 261
Target Start/End: Original strand, 6309 - 6507
Alignment:
| Q |
63 |
tgtgtttggttacccggtgaaaaagctaaaacgcacgtccatcacctcaaatgcgattttgctgtgtttggttctccttcacctccttgccgtcatcgta |
162 |
Q |
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| T |
6309 |
tgtgtttggttacctggtgaaaaagctaaaacgtacgtccatcatctcaaaagcgattttgctgtgtttggttctccttcacctcgttgccgtcatcgta |
6408 |
T |
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| Q |
163 |
cgttttgctttccaaaatcaattttgggtgaagctctgactcctagcttctggaaatcgattttctaaaccgtacttttgattcaatcaatttatctct |
261 |
Q |
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| T |
6409 |
cgttttgctctccaaaatcaattttgggtgaagctctacttactagcttctggaaatcgattttctaaaccgtacttttgtttcagtcaacttctctct |
6507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 40351702 - 40351818
Alignment:
| Q |
117 |
gattttgctgtgtttggttctccttcacctccttgccgtcatcgtacgttttgctttccaaaatcaattttgggtgaagctctgactcctagcttctgga |
216 |
Q |
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|||||| ||||||||||||||||| |||||| | | | |||| |||||||||||| | ||||||||||||| ||||||| || || |||||| | || |
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| T |
40351702 |
gattttactgtgtttggttctcctccacctctctactattatcgcacgttttgcttttgataatcaattttgggagaagctccgaatcttagctttttga |
40351801 |
T |
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| Q |
217 |
aatcgattttctaaacc |
233 |
Q |
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| T |
40351802 |
aagcgattctctcaacc |
40351818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 233
Target Start/End: Original strand, 33588111 - 33588282
Alignment:
| Q |
63 |
tgtgtttggttacccggtgaaaaagctaaaa-cgcacgtccatcacctcaaatgcgattttgctgtgtttggttctccttcacctccttgccgtcatcgt |
161 |
Q |
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| T |
33588111 |
tgtgtttggtaacccggtcaaaaagccaaaaacacgcgtccatgccttcaaaagtgattttacagtgtttggttctcctctacccgtccaccgccatcgt |
33588210 |
T |
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| Q |
162 |
acgttttgctttccaaaatcaattttgggtgaagctctgactcctagcttctggaaatcgattttctaaacc |
233 |
Q |
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| T |
33588211 |
aagtttagcttttcaaaattaattttaggtgaagctccaattcctagcttcttgaaattgattctctcaacc |
33588282 |
T |
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