View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2752_low_16 (Length: 380)
Name: NF2752_low_16
Description: NF2752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2752_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 361
Target Start/End: Original strand, 36465036 - 36465384
Alignment:
| Q |
13 |
acctgtgaaaaatattagtatcaaagatgttatcatccagtcaggaaaaatgacattaaaagcaacaccaagactgattccaagcattaacattggttga |
112 |
Q |
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| T |
36465036 |
acctgtgaaaaatattagtatcaaagatgttatcatccagtcaggaaaaatgacattaaaagcaacaccaagactgattccaagcattaacattggttga |
36465135 |
T |
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| Q |
113 |
aaaagaagtgctaaatcatagtcaatcacaggcaggtcaagtgttggatgtctttgcctcaagttgtataaaacagttgctcctgctccacctgtaatca |
212 |
Q |
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| T |
36465136 |
aaaagaagtgctaaatcatagtcaatcacaggcaggtcaagtgttgggtgtctttgcctcaagttgtataaaacagttgctcctgctccacctgtaatca |
36465235 |
T |
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| Q |
213 |
tgccttcaccaaacaaacaaaaatccatgttatctattttaatagtgaaatgatactttaaaaataggacacacactaagacaacatgtagcacgtgtta |
312 |
Q |
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| T |
36465236 |
tgccttcaccaaacaaacaaaaatccatgttatctattttaatagagaaatgatactttaaaaataggacacacactaagacaacatgtagcacgtgtta |
36465335 |
T |
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| Q |
313 |
tattggttagaaagttgaggtttgatattcagcatatacaatgaggtga |
361 |
Q |
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| T |
36465336 |
tattggttagaaagttgaggtttgatattcagcatatacaatgaggtga |
36465384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 326
Target Start/End: Original strand, 36474218 - 36474548
Alignment:
| Q |
17 |
gtgaaaaatattagtatcaaagatgttatcatccagtcaggaaaaatgacattaaaagcaacaccaagactgattccaagcattaacattggttgaaaaa |
116 |
Q |
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| T |
36474218 |
gtgaaaaatatgattagcaaagttgttaacatccagtcagggaaaatgagattgaaagcaacaccaagactgattccaagcattaacattggttggaaaa |
36474317 |
T |
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| Q |
117 |
gaagtgctaaatcatagtcaatcacaggcaggtcaagtgttggatgtctttgcctcaagttgtataaaacagttgctcctgctccacctgtaatcatgcc |
216 |
Q |
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| T |
36474318 |
gaagtgctaaatcatagtcaatcacaggcaggtcaagtgttgggtgtcttttcttcaagttgtataaaacagttgctcctgctccaccagtaatcatgac |
36474417 |
T |
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| Q |
217 |
ttcac--caaacaaacaaa-------------aatccatgttatctattttaatagtgaaatgatacttt---aaaaataggacac---acactaagaca |
295 |
Q |
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| T |
36474418 |
ttcacaccaaacaaacaaacacatatgcattcaatccatattacgtattttaatagagaaatgatactttgacaaaaatattataagaaacactaagaca |
36474517 |
T |
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| Q |
296 |
acatgtagcacgtgttatattggttagaaag |
326 |
Q |
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|||| |||||| ||||||||||||||||||| |
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| T |
36474518 |
acatatagcacatgttatattggttagaaag |
36474548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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