View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2752_low_17 (Length: 372)
Name: NF2752_low_17
Description: NF2752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2752_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 37719272 - 37719067
Alignment:
| Q |
13 |
aatataccaaagaccgaaaccgatggatcagcttatgccacacgaaggaaaggacaagttgaagaagaaaagtaaggtggcttgactaactgcacatatc |
112 |
Q |
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| T |
37719272 |
aatataccaaagaccgaaaccgatggatcagcttatgccacacgaagaaaaggacaagttgaagaagaaaagtaaggtggcttgactaactgcacatatc |
37719173 |
T |
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| Q |
113 |
aacaacgaatggctaaaatttctacactgacttgtatatgacgacccattgaccattacaagatcacattaaattcaagtatgaatattgaacactccct |
212 |
Q |
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| T |
37719172 |
aacaacgaatggctaagatttctacactgacttgtatatgacgacccattgaccattacaagatcacattaaattcaagtatgaatattgaatactccct |
37719073 |
T |
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| Q |
213 |
ctaatt |
218 |
Q |
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|||||| |
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| T |
37719072 |
ctaatt |
37719067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 273 - 348
Target Start/End: Complemental strand, 37719054 - 37718979
Alignment:
| Q |
273 |
ttaagttttatgcccctttcattctacaatgatcactttgtaaatttatttgtctcattttatatgttgttatgag |
348 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37719054 |
ttaagttttatgcccctttcatcctacaatgatcactttgtaaatttatttgtcccattttatatgttgttatgag |
37718979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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