View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2752_low_19 (Length: 368)
Name: NF2752_low_19
Description: NF2752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2752_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 118 - 355
Target Start/End: Original strand, 698478 - 698712
Alignment:
| Q |
118 |
ttccatgtccagggttttcatatagctcctattgcggcgcatctaacagtaactcaaat--------ttctagtggaggaaaacttatnnnnnnnntgat |
209 |
Q |
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| T |
698478 |
ttccatgtccagggttttcatatagctcctattgcggcgcatctaacagtaactcgaataggataagttctagtggaggaaaac-----------atgat |
698566 |
T |
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| Q |
210 |
tttaacgtgtttagatgtgttcaagtagaactgcttttgtttgtagaattgattttaacttgaagttagaatttgaaacttttatctctgcaattgcttt |
309 |
Q |
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| T |
698567 |
tttaacttgtttagatgtgttcaagtagaactgcttttgtttgtagaattgattttaacttgaagttagaatatgaaacttttatctctgcaattgcttt |
698666 |
T |
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| Q |
310 |
tacatttaaatttaattttcaaactcctttttatataaatgtatat |
355 |
Q |
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| T |
698667 |
tacatttaaatttaattttcaaactcctttttatataaatgtatat |
698712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 286
Target Start/End: Complemental strand, 7087411 - 7087349
Alignment:
| Q |
224 |
atgtgttcaagtagaactgcttttgtttgtagaattgattttaacttgaagttagaatttgaa |
286 |
Q |
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| T |
7087411 |
atgttttcgagtagaattgattttgtttttagaattggttttaacttgaagctagaatttgaa |
7087349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 45369121 - 45369186
Alignment:
| Q |
217 |
tgtttagatgtgttcaagtagaactgcttttgtttgtagaattgattttaacttgaagttagaatt |
282 |
Q |
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| T |
45369121 |
tgtttggatgttctcaagtagaattgattttgcttctagaattgattttaacttgaagctagaatt |
45369186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 698110 - 698142
Alignment:
| Q |
93 |
tcaccctaccaacttcatcttcaatttccatgt |
125 |
Q |
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| T |
698110 |
tcaccctaccaacttcatcttcaatttccatgt |
698142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 698015 - 698052
Alignment:
| Q |
1 |
gaatcctagtcccc-cctctctgcaaccttctacggtg |
37 |
Q |
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| T |
698015 |
gaatcctagtccccccctctctgcaaccttctacggtg |
698052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 292
Target Start/End: Complemental strand, 7328730 - 7328691
Alignment:
| Q |
253 |
tagaattgattttaacttgaagttagaatttgaaactttt |
292 |
Q |
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| T |
7328730 |
tagaattgattctaacttgaagctagaatttgaaactttt |
7328691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 284
Target Start/End: Complemental strand, 41115499 - 41115422
Alignment:
| Q |
206 |
tgattttaacgtgtttagatgtgttcaagtagaactgcttttgtttgtagaattgattttaacttgaagttagaatttg |
284 |
Q |
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| T |
41115499 |
tgattttgacatgtttggatgttttaaagtagaattgattttgcttgtagaattgattct-acttgaagctagaatttg |
41115422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 48490552 - 48490590
Alignment:
| Q |
254 |
agaattgattttaacttgaagttagaatttgaaactttt |
292 |
Q |
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| T |
48490552 |
agaattgattataactcgaagttagaatttgaaactttt |
48490590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 44148042 - 44147985
Alignment:
| Q |
253 |
tagaattgattttaacttgaagttagaatttgaaacttttatctctgcaattgctttt |
310 |
Q |
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| T |
44148042 |
tagaattgattataacttgaagttagagtttagagcttttatctccgcaattgatttt |
44147985 |
T |
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