View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2752_low_20 (Length: 357)

Name: NF2752_low_20
Description: NF2752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2752_low_20
NF2752_low_20
[»] chr5 (4 HSPs)
chr5 (1-339)||(14357339-14357677)
chr5 (1-49)||(40815578-40815626)
chr5 (1-49)||(30915800-30915848)
chr5 (2-42)||(30915872-30915912)
[»] chr7 (3 HSPs)
chr7 (1-327)||(29657313-29657645)
chr7 (1-49)||(22794086-22794134)
chr7 (66-106)||(7147577-7147617)
[»] chr1 (3 HSPs)
chr1 (1-115)||(49619511-49619618)
chr1 (1-107)||(40778694-40778794)
chr1 (1-29)||(40779411-40779439)
[»] chr8 (2 HSPs)
chr8 (1-107)||(16497133-16497232)
chr8 (1-48)||(11080778-11080825)
[»] scaffold0034 (1 HSPs)
scaffold0034 (5-90)||(98366-98444)
[»] chr4 (4 HSPs)
chr4 (151-270)||(21731158-21731277)
chr4 (1-48)||(5547216-5547263)
chr4 (1-59)||(37642274-37642332)
chr4 (1-34)||(54373769-54373802)
[»] chr2 (2 HSPs)
chr2 (1-60)||(12365769-12365828)
chr2 (3-49)||(20921837-20921883)
[»] scaffold2117 (1 HSPs)
scaffold2117 (1-121)||(203-317)
[»] chr6 (2 HSPs)
chr6 (1-48)||(682578-682625)
chr6 (74-110)||(682643-682679)
[»] scaffold0171 (1 HSPs)
scaffold0171 (1-112)||(28943-29047)


Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 14357677 - 14357339
Alignment:
Q  1 aatcaaacatttaaatttataattaacaccaccaacatcattcaaaatcagatcatcaaagtccaaaactcattaactccaaaaagaaactttctatcac 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14357677 aatcaaacatttaaatttataattaacaccatcaacatcattcaaaatcagatcatcaaagtccaaaactcattaactccaaaaagaaactttttatcac 14357578  T
Q  101 caaaatccttccctttcaccaaaagacatagagggaaggtgtttgatgttaggaaaataactagtgaaagccatagcagacagcgcatcagcagcgaaaa 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14357577 caaaatcattccctttcaccaaaagacatagagggaaggtgtttgatgttaggaaaataactagtgaaagccatagcagacagcgcatcagcagcgaaaa 14357478  T
Q  201 taaattgaaaaatacgcagagaaaggccaccagcagtatcgggcatgccttgaatatccttcatcctcactatttcgttcagcaatatcaacaccaccat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14357477 taaattgaaaaatacgcagagaaaggccaccagcagtatcgggcatgccttgaatatccttcatcctcactatttcgttcagcaacatcaacaccaccat 14357378  T
Q  301 cgccatcagtagttggaacttcttcaactgagtgaattg 339  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  14357377 cgccatcagtagttggaacttcttcaactgggtgaattg 14357339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40815578 - 40815626
Alignment:
Q  1 aatcaaacatttaaatttataattaacaccaccaacatcattcaaaatc 49  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40815578 aatcaaacatttaaatttataattaacaccaccaccatcattcaaaatc 40815626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30915800 - 30915848
Alignment:
Q  1 aatcaaacatttaaatttataattaacaccaccaacatcattcaaaatc 49  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  30915800 aatcaaacctttaaatttataattaacaccaccaccatcattcaaaatc 30915848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 30915912 - 30915872
Alignment:
Q  2 atcaaacatttaaatttataattaacaccaccaacatcatt 42  Q
    ||||||| ||||||||||||||||||| ||||| |||||||    
T  30915912 atcaaacctttaaatttataattaacatcaccaccatcatt 30915872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 29657313 - 29657645
Alignment:
Q  1 aatcaaacatttaaatttataattaacaccaccaacatcattcaaaatcagatcatcaaagtccaaaactcattaactccaaaaagaaactttctatcac 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29657313 aatcaaacatttaaatttataattaacaccaccaccatcattcaaaatcggatcatcaaagtccaaaactcattaactccaaaaagaaactttctatcac 29657412  T
Q  101 caaaatccttccctttcaccaaaagacatagagggaaggtgtttgatgttaggaaaataactagtgaaagccatagcagacagcgcatcagcagcgaaaa 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||  ||| |    
T  29657413 caaaatccttccctttcaccaaaagatatagagggaaggtgtttgatgttacgaaaataactagtgaaagccataacagacagcgcatcaacaaagaata 29657512  T
Q  201 taaattgaaaaatacgcagagaaaggccaccagcagtatcgggcatgccttgaatatccttcatcctcactatttcgttcagcaatatcaacac------ 294  Q
    ||||||| |||||||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||||||||| ||||||||| | ||||||          
T  29657513 taaattgcaaaatacgcagataaaggccaccaacactattgggcatgccttgaatatccttcatcctcactattttgttcagcaacaacaacaccaccat 29657612  T
Q  295 caccatcgccatcagtagttggaacttcttcaa 327  Q
    ||||||| |||||||||||||||||||||||||    
T  29657613 caccatcaccatcagtagttggaacttcttcaa 29657645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22794134 - 22794086
Alignment:
Q  1 aatcaaacatttaaatttataattaacaccaccaacatcattcaaaatc 49  Q
    |||||||| |||||||||||||||||||||||||  |||||||||||||    
T  22794134 aatcaaacctttaaatttataattaacaccaccacaatcattcaaaatc 22794086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 7147617 - 7147577
Alignment:
Q  66 aaactcattaactccaaaaagaaactttctatcaccaaaat 106  Q
    |||| ||||||||||||||||||||||||  ||||||||||    
T  7147617 aaacccattaactccaaaaagaaactttcattcaccaaaat 7147577  T

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Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 49619618 - 49619511
Alignment:
Q  1 aatcaaacatttaaatttataattaacaccaccaacatcattcaaaatcagatcatcaaagtccaaaactcattaactccaaaaagaaactttctatcac 100  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||       ||||||| |||||||||||||| |||||||||| ||||    
T  49619618 aatcaaacatttaaatttagaattaacaccaccaccatcattcaaaatcagatca-------ccaaaacccattaactccaaaacgaaactttctttcac 49619526  T
Q  101 caaaatccttccctt 115  Q
    |||||||||||||||    
T  49619525 caaaatccttccctt 49619511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 40778694 - 40778794
Alignment:
Q  1 aatcaaacatttaaatttataa--ttaacaccaccaacatcattcaaaatcagatcatcaaagtccaaaactcattaactccaaaaagaaactttctatc 98  Q
    ||||||||||||||||||||||  |||||||||||| |||||||||||||| |||||       ||||||| |||||||||||||||| |||| ||||||    
T  40778694 aatcaaacatttaaatttataaaattaacaccaccaccatcattcaaaatcggatca-------ccaaaacccattaactccaaaaag-aactatctatc 40778785  T
Q  99 accaaaatc 107  Q
    |||||||||    
T  40778786 accaaaatc 40778794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 40779439 - 40779411
Alignment:
Q  1 aatcaaacatttaaatttataattaacac 29  Q
    |||||||||||||||||||||||||||||    
T  40779439 aatcaaacatttaaatttataattaacac 40779411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 16497133 - 16497232
Alignment:
Q  1 aatcaaacatttaaatttataa-ttaacaccaccaacatcattcaaaatcagatcatcaaagtccaaaactcattaactccaaaaagaaactttctatca 99  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||       |||||| ||| |||||||||||| ||||||||||||    
T  16497133 aatcaaacatttaaatttataaattaacaccaccaccatcattcaaaatcggatcat-------caaaacccatcaactccaaaaag-aactttctatca 16497224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 11080825 - 11080778
Alignment:
Q  1 aatcaaacatttaaatttataattaacaccaccaacatcattcaaaat 48  Q
    |||||||| |||||||||||||||||||||||||  ||||||||||||    
T  11080825 aatcaaacctttaaatttataattaacaccaccactatcattcaaaat 11080778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 98366 - 98444
Alignment:
Q  5 aaacatttaaatttataattaacaccaccaacatcattcaaaatcagatcatcaaagtccaaaactcattaactccaaaaagaaac 90  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||       ||||||| ||||||||||||||||||||    
T  98366 aaacatttaaatttataattaacaccaccaccatcattcaaaatcggatca-------ccaaaacccattaactccaaaaagaaac 98444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 151 - 270
Target Start/End: Complemental strand, 21731277 - 21731158
Alignment:
Q  151 aggaaaataactagtgaaagccatagcagacagcgcatcagcagcgaaaataaattgaaaaatacgcagagaaaggccaccagcagtatcgggcatgcct 250  Q
    |||||||| ||| ||| |||||||| |||| |||||| |||| || |||| ||| ||  ||| ||||| || ||||||||||  |||| | |||||||||    
T  21731277 aggaaaatcactggtggaagccataacagatagcgcagcagccgcaaaaacaaactgtgaaacacgcaaagcaaggccaccaatagtaccaggcatgcct 21731178  T
Q  251 tgaatatccttcatcctcac 270  Q
    ||||||||||||||||||||    
T  21731177 tgaatatccttcatcctcac 21731158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5547216 - 5547263
Alignment:
Q  1 aatcaaacatttaaatttataattaacaccaccaacatcattcaaaat 48  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||    
T  5547216 aatcaaacctttaaatttataattaacaccaccaccatcattcaaaat 5547263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 37642332 - 37642274
Alignment:
Q  1 aatcaaacatttaaatttataattaacaccaccaacatcattcaaaatcagatcatcaa 59  Q
    |||||||| |||||||||||||| |||||||||| |||||||||||||  |||||||||    
T  37642332 aatcaaacctttaaatttataatcaacaccaccaccatcattcaaaattggatcatcaa 37642274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 54373802 - 54373769
Alignment:
Q  1 aatcaaacatttaaatttataattaacaccacca 34  Q
    |||||||||||||||||||||| |||||||||||    
T  54373802 aatcaaacatttaaatttataactaacaccacca 54373769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 12365828 - 12365769
Alignment:
Q  1 aatcaaacatttaaatttataattaacaccaccaacatcattcaaaatcagatcatcaaa 60  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||| ||||| ||||    
T  12365828 aatcaaacctttaaatttataattaacaccaccaccatcattcaaaatcggatcaccaaa 12365769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 20921837 - 20921883
Alignment:
Q  3 tcaaacatttaaatttataattaacaccaccaacatcattcaaaatc 49  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  20921837 tcaaacatttaaatttataattaacaccaccaccatcattcaaaatc 20921883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2117 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold2117
Description:

Target: scaffold2117; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 317 - 203
Alignment:
Q  1 aatcaaacatttaaatttataattaacaccaccaacatcattcaaaatcagatcatcaaagtccaaaactcattaactccaaaaagaaactttctatcac 100  Q
    ||||||||  |||||| ||||||||||||||| | |||||| ||||||  |||||       |||||||||||| |||||||||||||||||| | ||||    
T  317 aatcaaacccttaaatctataattaacaccacaaccatcatccaaaattggatca-------ccaaaactcattcactccaaaaagaaactttttctcac 225  T
Q  101 caaaatccttcc-ctttcacca 121  Q
    ||||| |||||| |||||||||    
T  224 caaaacccttcctctttcacca 203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 682578 - 682625
Alignment:
Q  1 aatcaaacatttaaatttataattaacaccaccaacatcattcaaaat 48  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||    
T  682578 aatcaaacctttaaatttataattaacaccaccaccatcattcaaaat 682625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 682643 - 682679
Alignment:
Q  74 taactccaaaaagaaactttctatcaccaaaatcctt 110  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  682643 taactccaaaaagaaattttctctcaccaaaatcctt 682679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 29047 - 28943
Alignment:
Q  1 aatcaaacatttaaatttataattaacaccaccaacatcattcaaaatcagatcatcaaagtccaaaactcattaactccaaaaagaaactttctatcac 100  Q
    |||||||| ||||||| || |||||||||||| | |||||| ||||||  |||||       ||||||| |||| |||||||||||||||||||  ||||    
T  29047 aatcaaacctttaaatctacaattaacaccacaaccatcatccaaaattggatca-------ccaaaacccattcactccaaaaagaaactttcattcac 28955  T
Q  101 caaaatccttcc 112  Q
    | ||||||||||    
T  28954 ccaaatccttcc 28943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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