View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2752_low_29 (Length: 299)
Name: NF2752_low_29
Description: NF2752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2752_low_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 49004467 - 49004188
Alignment:
| Q |
1 |
ctccatttcttcagacccaacttggttagtctcaaatccttcctcctgtacaagtacaatctgcgattctgcttcatctccgatcttttcctgtacctgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
49004467 |
ctccatttcttcagacccaacttggttagtctcaaatccttcctcctgtacaagtacaatctgcgattctgcttcatctccaatcttttcctgtacctgt |
49004368 |
T |
|
| Q |
101 |
ttattgtgaaaagaaaagcaaatgaaacatcaaagaatgctagaactgctgtaaattcatgacaagaaaaaggttgaaaggcgaaaacaacaattacctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
49004367 |
ttattgtgaaaagaaaagcaaatgaaacatcaaagaatgctagaactgctgtaaattcatgacaagaaaaaggttgaaaggcgaaaacaacaattacccc |
49004268 |
T |
|
| Q |
201 |
aggtttcatacgtttccttgaagctccactgtccatgcttcctttttgagctgacattggttaagcctataggtataaaa |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49004267 |
aggtttcatacgtttccttgaagctccactgtccatgcttcctttttgagctgacattggttaagcctataggtataaaa |
49004188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 38116686 - 38116404
Alignment:
| Q |
1 |
ctccatttcttcagacccaacttggttagtctcaaatccttcctcctgtacaagtacaatctgcgattctgcttcatctccgatcttttcctgtac---c |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||| | |
|
|
| T |
38116686 |
ctccatttcttcagacccaacttggttagtctcaaatccttcctcctgtacaagtacaatctgcgattctgcttcatctccaaacttttcttgtactacc |
38116587 |
T |
|
| Q |
98 |
tgtttattgtgaaaagaaaagcaaatgaaacatcaaagaatgctagaactgctgtaaattcatgacaagaaaaaggttgaaaggcgaaaacaacaattac |
197 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38116586 |
tgtttattgtgaaaagaaaagcaaattaaacatcaaagaatgcttgaaatgctgtaaattcatgacaagaaaaagattgaaaggcgaaaacaacaattac |
38116487 |
T |
|
| Q |
198 |
ctcaggtttcatacgtttccttgaagctccactgtccatgcttcctttttgagctgacattggttaagcctataggtataaaa |
280 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38116486 |
cccaggtttcatacgtttccttgaagctccactgtccatgcttcctttttgagctgacattggttaagcctacaggtataaaa |
38116404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 2 - 280
Target Start/End: Complemental strand, 38160489 - 38160210
Alignment:
| Q |
2 |
tccatttcttcagacccaacttggttagtctcaaatccttcctcctgtacaagtacaatctgcgattctgcttcatctccgatcttttcctgtacctgtt |
101 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||| ||||||| |
|
|
| T |
38160489 |
tccatttcctcagacccaatttggttagtctcaaatccttcctcctgtacaagcacaatctgtgattctgcttcatctcgtgtcttttcctgaacctgtt |
38160390 |
T |
|
| Q |
102 |
tattgtgaaaagaaaagcaaatgaaacatcaaag------aatgctagaactgctgtaaattcatgaca-agaaaaaggttgaaaggcgaaaacaacaat |
194 |
Q |
| |
|
|||||||||| ||| |||||| | ||||||| || ||||| ||| ||||||| |||||| |||||||| ||||||| | || ||| |
|
|
| T |
38160389 |
tattgtgaaacaaaatagaaatgacatatcaaaggactacaaaattagaaatgcagtaaatttatgacagagaaaaagtttgaaag------aaaaaaat |
38160296 |
T |
|
| Q |
195 |
tacctcaggtttcatacgtttccttgaagctccactgtccatgcttcctttttgagctgacattggttaagcctataggtataaaa |
280 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
38160295 |
tacctcaggtttcatacgtttccttgtatttccactgtccatgcttcccttttgagcagacattggttaagcctacaggtacaaaa |
38160210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University