View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2752_low_32 (Length: 294)

Name: NF2752_low_32
Description: NF2752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2752_low_32
NF2752_low_32
[»] chr7 (6 HSPs)
chr7 (18-145)||(45802810-45802937)
chr7 (143-192)||(42607078-42607127)
chr7 (145-192)||(29060741-29060788)
chr7 (146-192)||(6729398-6729444)
chr7 (221-279)||(35770359-35770419)
chr7 (226-275)||(32548590-32548641)
[»] chr8 (3 HSPs)
chr8 (146-284)||(37562295-37562433)
chr8 (144-284)||(13934963-13935103)
chr8 (221-249)||(1487662-1487690)
[»] chr3 (7 HSPs)
chr3 (145-284)||(51421585-51421724)
chr3 (176-284)||(51420891-51420999)
chr3 (221-284)||(49287772-49287837)
chr3 (146-192)||(43768761-43768807)
chr3 (143-192)||(33455783-33455832)
chr3 (144-208)||(8652808-8652872)
chr3 (144-192)||(33454864-33454912)
[»] chr1 (4 HSPs)
chr1 (144-284)||(38931312-38931452)
chr1 (176-284)||(38932038-38932146)
chr1 (145-192)||(48835099-48835146)
chr1 (145-194)||(2687727-2687776)
[»] chr4 (1 HSPs)
chr4 (145-275)||(33370794-33370924)
[»] chr2 (6 HSPs)
chr2 (221-284)||(4386106-4386171)
chr2 (144-209)||(36390955-36391020)
chr2 (151-212)||(36391654-36391715)
chr2 (145-209)||(34617652-34617716)
chr2 (145-192)||(20992021-20992068)
chr2 (142-206)||(7868129-7868193)
[»] chr5 (3 HSPs)
chr5 (226-275)||(32944403-32944452)
chr5 (144-209)||(4554655-4554720)
chr5 (144-192)||(4820452-4820500)


Alignment Details
Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 45802810 - 45802937
Alignment:
Q  18 attaatattgttagcttaacccctaaactcctatgactcttctttgcttattacacaggtatcttttgtgggaataaccctgtagaagcaccaaagaaaa 117  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  45802810 attaatattgttagcttagcccctaaactcctgtgactcttctttgcttattacacaagtatcttttgtgggaataaccccgtagaagcaccaaagaaaa 45802909  T
Q  118 aatcaaagctagagagaggaaaattata 145  Q
    ||||||||||||||||||| ||||||||    
T  45802910 aatcaaagctagagagagggaaattata 45802937  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 42607078 - 42607127
Alignment:
Q  143 ataggtggggtttagcataggaaaggagaattattttccaccatgggaaa 192  Q
    |||||||||||||||||| ||||||| ||||| ||| |||||||||||||    
T  42607078 ataggtggggtttagcatgggaaaggggaattgtttcccaccatgggaaa 42607127  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 29060788 - 29060741
Alignment:
Q  145 aggtggggtttagcataggaaaggagaattattttccaccatgggaaa 192  Q
    |||||||||||||||| ||||||| ||||| ||| |||||||||||||    
T  29060788 aggtggggtttagcatgggaaaggggaattgtttcccaccatgggaaa 29060741  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 6729398 - 6729444
Alignment:
Q  146 ggtggggtttagcataggaaaggagaattattttccaccatgggaaa 192  Q
    |||||| |||||||| ||||||||||||| |||||||| ||||||||    
T  6729398 ggtgggatttagcatgggaaaggagaattgttttccactatgggaaa 6729444  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 35770359 - 35770419
Alignment:
Q  221 ttatcatacactctcaacactata--tttttgtcactatcttccactagcatctctctcct 279  Q
    |||||||||||||||||||| | |  |||||||||||||||||||| | |||| |||||||    
T  35770359 ttatcatacactctcaacaccagaattttttgtcactatcttccacaaccatcactctcct 35770419  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 32548641 - 32548590
Alignment:
Q  226 atacactctcaacactatatt--tttgtcactatcttccactagcatctctc 275  Q
    |||||| ||||||| ||||||  |||||||||||||||||||| ||||||||    
T  32548641 atacaccctcaacattatattattttgtcactatcttccactaccatctctc 32548590  T

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Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 146 - 284
Target Start/End: Original strand, 37562295 - 37562433
Alignment:
Q  146 ggtggggtttagcataggaaaggagaattattttccaccatgggaaaatcaattttaaccattaaatctacaattttatcatacactctcaacactatat 245  Q
    ||||||||||||||| ||||||||||||| ||| ||||||| ||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  37562295 ggtggggtttagcatgggaaaggagaattgtttcccaccataggaaagtcaattttaaccattagatctacaatcttatcatacactctcaacactatat 37562394  T
Q  246 ttttgtcactatcttccactagcatctctctccttcatc 284  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  37562395 ttttgtcactatcttccactaccatctctctccttcatc 37562433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 144 - 284
Target Start/End: Complemental strand, 13935103 - 13934963
Alignment:
Q  144 taggtggggtttagcataggaaaggagaattattttccaccatgggaaaatcaattttaaccattaaatctacaattttatcatacactctcaacactat 243  Q
    |||||||  |||||||| |||||||| | || ||||||||||| ||||| ||| |||||||||||| ||||||||| || ||||||||||||||||||||    
T  13935103 taggtggcatttagcatgggaaaggaaagttgttttccaccataggaaagtcacttttaaccattagatctacaatcttgtcatacactctcaacactat 13935004  T
Q  244 atttttgtcactatcttccactagcatctctctccttcatc 284  Q
    ||||||||||||||||||||||| ||||||| || ||||||    
T  13935003 atttttgtcactatcttccactaccatctctttcattcatc 13934963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 249
Target Start/End: Original strand, 1487662 - 1487690
Alignment:
Q  221 ttatcatacactctcaacactatattttt 249  Q
    |||||||||||||||||||||||||||||    
T  1487662 ttatcatacactctcaacactatattttt 1487690  T

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Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 145 - 284
Target Start/End: Complemental strand, 51421724 - 51421585
Alignment:
Q  145 aggtggggtttagcataggaaaggagaattattttccaccatgggaaaatcaattttaaccattaaatctacaattttatcatacactctcaacactata 244  Q
    ||||||||||||||||  |||||| ||||| ||| ||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  51421724 aggtggggtttagcatgagaaaggggaattgtttcccaccatgggaaagtcaatttgaaccattaaatctacaatcttatcatacactctcaacactata 51421625  T
Q  245 tttttgtcactatcttccactagcatctctctccttcatc 284  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  51421624 tttttgtcactatcttccactaccatctctctccttcatc 51421585  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 51420891 - 51420999
Alignment:
Q  176 ttttccaccatgggaaaatcaattttaaccattaaatctacaattttatcatacactctcaacactatatttttgtcactatcttccactagcatctctc 275  Q
    ||||||||||| ||||| ||| |||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  51420891 ttttccaccataggaaagtcatttttaaccattagatctacaatcttgtcatacactctcaacactatatttttgtcactatcttccactaccatctctt 51420990  T
Q  276 tccttcatc 284  Q
    || ||||||    
T  51420991 tcattcatc 51420999  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 284
Target Start/End: Original strand, 49287772 - 49287837
Alignment:
Q  221 ttatcatacactctcaacactatatttt--tgtcactatcttccactagcatctctctccttcatc 284  Q
    |||||||||||||||||||| | |||||  |||||||||||||||| | |||| ||||||||||||    
T  49287772 ttatcatacactctcaacaccaaatttttttgtcactatcttccacaaccatcactctccttcatc 49287837  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 43768807 - 43768761
Alignment:
Q  146 ggtggggtttagcataggaaaggagaattattttccaccatgggaaa 192  Q
    ||||||||||||||| |||| ||||| || |||||||||||||||||    
T  43768807 ggtggggtttagcatgggaatggagagttgttttccaccatgggaaa 43768761  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 33455832 - 33455783
Alignment:
Q  143 ataggtggggtttagcataggaaaggagaattattttccaccatgggaaa 192  Q
    |||||||||||||||||| ||||||| ||||| ||| ||||||| |||||    
T  33455832 ataggtggggtttagcatgggaaaggggaattgtttcccaccataggaaa 33455783  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 8652808 - 8652872
Alignment:
Q  144 taggtggggtttagcataggaaaggagaattattttccaccatgggaaaatcaattttaaccatt 208  Q
    ||||||||||||||||| ||||||| ||||   || ||||||||||||| | |||||| ||||||    
T  8652808 taggtggggtttagcatgggaaaggggaatcggttcccaccatgggaaagtaaattttcaccatt 8652872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 33454864 - 33454912
Alignment:
Q  144 taggtggggtttagcataggaaaggagaattattttccaccatgggaaa 192  Q
    ||||||||||||||||| |||||||| |||| ||| |||||||| ||||    
T  33454864 taggtggggtttagcatgggaaaggaaaattgtttcccaccatgagaaa 33454912  T

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Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 144 - 284
Target Start/End: Original strand, 38931312 - 38931452
Alignment:
Q  144 taggtggggtttagcataggaaaggagaattattttccaccatgggaaaatcaattttaaccattaaatctacaattttatcatacactctcaacactat 243  Q
    |||||||||||||||||  |||||| ||||| ||| ||||||||||||| ||||||| |||||||| ||||||||| |||||||||||||||||||||||    
T  38931312 taggtggggtttagcatgagaaaggggaattgtttcccaccatgggaaagtcaatttgaaccattagatctacaatcttatcatacactctcaacactat 38931411  T
Q  244 atttttgtcactatcttccactagcatctctctccttcatc 284  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  38931412 atttttgtcactatcttccactaccatctctctccttcatc 38931452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 176 - 284
Target Start/End: Complemental strand, 38932146 - 38932038
Alignment:
Q  176 ttttccaccatgggaaaatcaattttaaccattaaatctacaattttatcatacactctcaacactatatttttgtcactatcttccactagcatctctc 275  Q
    ||||||||||| ||||| ||| |||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  38932146 ttttccaccataggaaagtcatttttaaccattagatctacaatcttgtcatacactctcaacactatatttttgtcactatcttccactaccatctctt 38932047  T
Q  276 tccttcatc 284  Q
    || ||||||    
T  38932046 tcattcatc 38932038  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 48835146 - 48835099
Alignment:
Q  145 aggtggggtttagcataggaaaggagaattattttccaccatgggaaa 192  Q
    |||||||||||||||| ||||||| ||||| |||||||||||||||||    
T  48835146 aggtggggtttagcatgggaaaggggaattgttttccaccatgggaaa 48835099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 2687776 - 2687727
Alignment:
Q  145 aggtggggtttagcataggaaaggagaattattttccaccatgggaaaat 194  Q
    |||||||||||||||| |||||||| |||| ||| |||||||||||||||    
T  2687776 aggtggggtttagcatgggaaaggataattgtttcccaccatgggaaaat 2687727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 275
Target Start/End: Complemental strand, 33370924 - 33370794
Alignment:
Q  145 aggtggggtttagcataggaaaggagaattattttccaccatgggaaaatcaattttaaccattaaatctacaattttatcatacactctcaacactata 244  Q
    |||||||||||||||| |||||||| | || ||| ||||||||||||| | ||| ||| |||||| ||| |  |    || |||||| |||||||||| |    
T  33370924 aggtggggtttagcatgggaaaggatacttgtttcccaccatgggaaagttaatgttagccattagatcaagtagagaattatacaccctcaacactaga 33370825  T
Q  245 tttttgtcactatcttccactagcatctctc 275  Q
    || ||||||||||||||||||| ||||||||    
T  33370824 ttattgtcactatcttccactaccatctctc 33370794  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 221 - 284
Target Start/End: Complemental strand, 4386171 - 4386106
Alignment:
Q  221 ttatcatacactctcaacactata--tttttgtcactatcttccactagcatctctctccttcatc 284  Q
    |||||||||||||||||||||| |  |||||||||||||||||||| | |||| ||||||||||||    
T  4386171 ttatcatacactctcaacactagaattttttgtcactatcttccacaaccatcactctccttcatc 4386106  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 36390955 - 36391020
Alignment:
Q  144 taggtggggtttagcataggaaaggagaattattttccaccatgggaaaatcaattttaaccatta 209  Q
    ||||||||||||||||| |||||||  | || ||| ||||||||||||| | ||||||||||||||    
T  36390955 taggtggggtttagcatgggaaagggaagttgtttcccaccatgggaaagtaaattttaaccatta 36391020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 36391715 - 36391654
Alignment:
Q  151 ggtttagcataggaaaggagaattattttccaccatgggaaaatcaattttaaccattaaat 212  Q
    ||||||| || ||||||| || || ||||||||||||||||| | |||||||||||||||||    
T  36391715 ggtttagtatgggaaaggggagttgttttccaccatgggaaagtaaattttaaccattaaat 36391654  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 34617652 - 34617716
Alignment:
Q  145 aggtggggtttagcataggaaaggagaattattttccaccatgggaaaatcaattttaaccatta 209  Q
    |||||||||||||||| |||||||| |||| ||| ||||||||||||| | | |||| |||||||    
T  34617652 aggtggggtttagcatgggaaaggataattgtttcccaccatgggaaagttatttttgaccatta 34617716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 20992068 - 20992021
Alignment:
Q  145 aggtggggtttagcataggaaaggagaattattttccaccatgggaaa 192  Q
    |||||||||||||||| |||| ||||| || |||||||||||||||||    
T  20992068 aggtggggtttagcatgggaatggagagttgttttccaccatgggaaa 20992021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 7868193 - 7868129
Alignment:
Q  142 tataggtggggtttagcataggaaaggagaattattttccaccatgggaaaatcaattttaacca 206  Q
    |||||||||| ||||||||  |||||| || || ||| ||||||||||||| | |||||||||||    
T  7868193 tataggtgggatttagcatgagaaaggggagttgtttcccaccatgggaaagtaaattttaacca 7868129  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 32944452 - 32944403
Alignment:
Q  226 atacactctcaacactatatttttgtcactatcttccactagcatctctc 275  Q
    |||||| |||||||||| ||| ||||||||||||||||||| ||||||||    
T  32944452 atacaccctcaacactagattattgtcactatcttccactaccatctctc 32944403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 4554655 - 4554720
Alignment:
Q  144 taggtggggtttagcataggaaaggagaattattttccaccatgggaaaatcaattttaaccatta 209  Q
    |||||||||||||| || |||||||| |||| |||||||||||| ||||   |||||| |||||||    
T  4554655 taggtggggtttagtatgggaaaggaaaattgttttccaccatgagaaagctaattttgaccatta 4554720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 4820452 - 4820500
Alignment:
Q  144 taggtggggtttagcataggaaaggagaattattttccaccatgggaaa 192  Q
    ||||||||||||| ||| |||||||  |||| |||||||||||||||||    
T  4820452 taggtggggtttaacatgggaaagggaaattgttttccaccatgggaaa 4820500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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