View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2752_low_33 (Length: 290)

Name: NF2752_low_33
Description: NF2752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2752_low_33
NF2752_low_33
[»] chr6 (1 HSPs)
chr6 (1-280)||(28045345-28045624)
[»] chr2 (1 HSPs)
chr2 (39-183)||(37721655-37721804)


Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 28045345 - 28045624
Alignment:
Q  1 ccattctagatggatttaactatgactacttgaaaccattgcattcaatttgcataaacttagtgtatacataagctttggaatttatttgtacaaccat 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28045345 ccattctagatggatctaactatgactacttgaaaccattgcattcaatttgcataaacttagtgtatacataagctttggaatttatttgtacaaccat 28045444  T
Q  101 cctaatgttcttctgctttttcttgttcaaagtatttgcagcagtcgccaataaaagatctcacaacaaatgtctatgttgaacnnnnnnngctaaatta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       |||||||||    
T  28045445 cctaatgttcttctgctttttcttgttcaaagtatttgcagcagtctccaataaaagatctcacaacaaatgtctatgttgaactttttttgctaaatta 28045544  T
Q  201 tgcatagtatcatcttaagcttttgcatggtatttcgagtactaaagttgctttctagtacatgatgcaattgtcctatg 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28045545 tgcatagtatcatcttaagcttttgcatggtatttcgagtactaaagttgctttctagtacatgatgcaattgtcctatg 28045624  T

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Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 39 - 183
Target Start/End: Complemental strand, 37721804 - 37721655
Alignment:
Q  39 ttgcattcaatttgcataaacttagtgtata------cataagctttggaatttatttgtacaaccatcctaatgttcttctgctttttcttgttcaaag 132  Q
    |||||||||||| ||||||||||| ||||||      |||| |||||||||||||||||| ||||||||||||||||||||  ||| ||||||||| |||    
T  37721804 ttgcattcaattggcataaacttattgtatatatatacatacgctttggaatttatttgtgcaaccatcctaatgttcttcatcttcttcttgttc-aag 37721706  T
Q  133 tatttgcagcagtcgccaataaaagatctcacaacaaatgtctatgttgaa 183  Q
    |||||||||||||| |||||||||||||||||||||||||| || ||||||    
T  37721705 tatttgcagcagtctccaataaaagatctcacaacaaatgtttacgttgaa 37721655  T

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