View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2752_low_38 (Length: 254)
Name: NF2752_low_38
Description: NF2752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2752_low_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 40 - 244
Target Start/End: Original strand, 41975431 - 41975639
Alignment:
| Q |
40 |
acacttttgtctaatcctacactagtaattttgaattgcgtnnnnnnnn--cactaattttgatattgacccaaaaaagtgaggtata--tcaatcatgt |
135 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41975431 |
acacttctgtctaatcctacactagtaattttgaattgtgtaaaaaaaaaacactaattttgatattgacccaaaaaagtgaggtatatatcaatcatgt |
41975530 |
T |
|
| Q |
136 |
tttacgtgatcttagtgcccgctcatgctaagaagtggcgtaaagatagaatttacaagtctcaataatctacgagaatttcaatgnnnnnnncaatcta |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
41975531 |
tttacgtgatcttagtgcccgctcatgctaagaagtggcgtaaagatagaatttacaagtctcaataatcaacgagaatttcaatgaaaaaaacaatcta |
41975630 |
T |
|
| Q |
236 |
cgagaatta |
244 |
Q |
| |
|
||||||||| |
|
|
| T |
41975631 |
cgagaatta |
41975639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University