View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2752_low_4 (Length: 577)
Name: NF2752_low_4
Description: NF2752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2752_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 37237141 - 37236583
Alignment:
| Q |
1 |
atacatgcctcttcctggaatgaacactatcccacttcctttgctgaaattggcaccagaattgtatttctgtatcaacccttcatcaagattagattgg |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||| | |||| | || ||||||||||||||||||||| || || | |
|
|
| T |
37237141 |
atacatacctcttcctggaatgaacactatcccacttcctatgctgaaattggcatcttgattgaaattttgtatcaacccttcatcaagaccagctttg |
37237042 |
T |
|
| Q |
101 |
tttgcaatcttctgaagagtatcgtcagacctgagtggataggtaacaaacaagccataatcttttgaaatctggctattcccacaagaacagtttacag |
200 |
Q |
| |
|
| ||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
37237041 |
gtcgcaattttcgcaagagtatcatcagacctgagtggataggtaacaaacaagccataatcttttgaaatctggctattcccacatgaacaaattacag |
37236942 |
T |
|
| Q |
201 |
tgacattaatcttagccttaacaggtatatgatttggatcataactgttgaactttttcaataactcaacagttgtcaaacttgcgtaataagtatttgc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37236941 |
tgacattaatcttagccttaacaggtatatgatttggatcatagctgttgaactttttcaataactcaacagttgtcaaacttgcgtaataagtatttgc |
37236842 |
T |
|
| Q |
301 |
aattaaatcataatcgtcaccttcttttgctgtatattcaaacacatgtcctagaaattcacctccaatacattcacatgggaacggaacgttgactcta |
400 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37236841 |
aattaaatcataatcgtctccttcttttgttgtatattcaaacacatgtcctagaaattcacctccaatacattcacatgggaacggaacgttgattcta |
37236742 |
T |
|
| Q |
401 |
gtataggaaataagaccagatttatcgaatactacgcctctattgtagctcattataacatcaaaggaattggtaagaacaatctttgattgcataaagt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37236741 |
gtataggaaataagaccagatttatcgaatactacgtctctattgtagctcattataacatcaaaggaattggtaagaacaatctttgattgcataaagt |
37236642 |
T |
|
| Q |
501 |
ttgttacatttctgaattgaactgatcgcataacatagtaggaagctaaagctacatca |
559 |
Q |
| |
|
||| || |||||||| ||||| |||| | |||| ||||||||||||||||||||||||| |
|
|
| T |
37236641 |
ttgatatatttctgagttgaattgatggtataatatagtaggaagctaaagctacatca |
37236583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 37230223 - 37229665
Alignment:
| Q |
1 |
atacatgcctcttcctggaatgaacactatcccacttcctttgctgaaattggcaccagaattgtatttctgtatcaacccttcatcaagattagattgg |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||| | || |||| ||||||||||||||||| || || | |
|
|
| T |
37230223 |
atacatacctcttcctggaatgaacactatcccacttcctttgctgaaattggcatcttgattgaaattttgtaacaacccttcatcaagatcagctttg |
37230124 |
T |
|
| Q |
101 |
tttgcaatcttctgaagagtatcgtcagacctgagtggataggtaacaaacaagccataatcttttgaaatctggctattcccacaagaacagtttacag |
200 |
Q |
| |
|
| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
37230123 |
gtcgcaattttcgcaagagtatcatcagacctgagtggataggtaacaaacaagccaaaatcttttgaaatctggctattcccacacgaacaaattacag |
37230024 |
T |
|
| Q |
201 |
tgacattaatcttagccttaacaggtatatgatttggatcataactgttgaactttttcaataactcaacagttgtcaaacttgcgtaataagtatttgc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37230023 |
tgacattaatcttagccttaacaggtatatgatttggatcatagctgttgaactttttcaataactcaacagttgtcaaacttgcataataagtatttgc |
37229924 |
T |
|
| Q |
301 |
aattaaatcataatcgtcaccttcttttgctgtatattcaaacacatgtcctagaaattcacctccaatacattcacatgggaacggaacgttgactcta |
400 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37229923 |
aattaaatcataatcgtctccttcttttgttgtatattcaaacacatgtcctagaaattcacctccaatacattcacatgggaacggaacgttgattcta |
37229824 |
T |
|
| Q |
401 |
gtataggaaataagaccagatttatcgaatactacgcctctattgtagctcattataacatcaaaggaattggtaagaacaatctttgattgcataaagt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37229823 |
gtataggaaataagaccagatttatcgaatactacgactctattgtagctcattataacatcaaaggaattggtaagaacaatctttgattgtataaagt |
37229724 |
T |
|
| Q |
501 |
ttgttacatttctgaattgaactgatcgcataacatagtaggaagctaaagctacatca |
559 |
Q |
| |
|
||| ||||||| ||| ||||| |||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
37229723 |
ttgatacatttatgagttgaattgatggcataatatagtaggaagctaaagctacatca |
37229665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 37309323 - 37308923
Alignment:
| Q |
1 |
atacatgcctcttcctggaatgaacactatcccacttcctttgctgaaattggcaccagaattgtatttctgtatcaacccttcatcaagattagattgg |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37309323 |
atacatacctcttcctggaatgaacactatcccacttccattgctgaaattgacaccagaattgtaactctgtatcaacccttcatcaagattagattgg |
37309224 |
T |
|
| Q |
101 |
tttgcaatcttctgaagagtatcgtcagacctgagtggataggtaacaaacaagccataatcttttgaaatctggctattcccacaagaacagtttacag |
200 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| || |||| |
|
|
| T |
37309223 |
tttgcaatcttctgaagagtatcatcagttctgagtggataggtaataaacaagccataatcttttgaaatctggctgttcccacaagaacaattgacag |
37309124 |
T |
|
| Q |
201 |
tgacattaatcttagccttaacaggtatatgatttggatcataactgttgaactttttcaataactcaacagttgtcaaacttgcgtaataagtatttgc |
300 |
Q |
| |
|
| ||||||| |||||||||| |||||||||||| | |||||||||| |||||||||||||| | |||||| || ||||||||||| ||||||| ||| || |
|
|
| T |
37309123 |
ttacattaaccttagccttagcaggtatatgatcttgatcataactattgaactttttcaaaagctcaactgtagtcaaacttgcataataagaattggc |
37309024 |
T |
|
| Q |
301 |
aattaaatcataatcgtcaccttcttttgctgtatattcaaacacatgtcctagaaattcacctccaatacattcacatgggaacggaacgttgactcta |
400 |
Q |
| |
|
||| ||||||||| || ||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
37309023 |
aatcaaatcataagtatctccttcttttgctgagtattcaaatacatgtcccagaaaatcacctccaatacattcacatgggaatggaatgttgactcta |
37308924 |
T |
|
| Q |
401 |
g |
401 |
Q |
| |
|
| |
|
|
| T |
37308923 |
g |
37308923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 203 - 312
Target Start/End: Original strand, 33596573 - 33596682
Alignment:
| Q |
203 |
acattaatcttagccttaacaggtatatgatttggatcataactgttgaactttttcaataactcaacagttgtcaaacttgcgtaataagtatttgcaa |
302 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33596573 |
acattaaccttagccttaacaggtatatgttttggattataactgttgaactttttcaaaacctcaacagttgtcaaacttgcataataagtatttgcaa |
33596672 |
T |
|
| Q |
303 |
ttaaatcata |
312 |
Q |
| |
|
|||||||||| |
|
|
| T |
33596673 |
ttaaatcata |
33596682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 33596510 - 33596560
Alignment:
| Q |
1 |
atacatgcctcttcctggaatgaacactatcccacttcctttgctgaaatt |
51 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33596510 |
atacatacctcttcctggaatgaacactatcccacttcctttgctgaaatt |
33596560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University