View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2752_low_40 (Length: 238)

Name: NF2752_low_40
Description: NF2752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2752_low_40
NF2752_low_40
[»] chr3 (6 HSPs)
chr3 (17-237)||(22627223-22627443)
chr3 (17-178)||(11139518-11139679)
chr3 (17-105)||(39564506-39564594)
chr3 (181-237)||(11139480-11139536)
chr3 (114-178)||(39564454-39564518)
chr3 (181-237)||(39564416-39564472)
[»] scaffold0440 (1 HSPs)
scaffold0440 (17-237)||(9124-9344)
[»] chr7 (11 HSPs)
chr7 (17-237)||(35773440-35773660)
chr7 (17-178)||(6966285-6966446)
chr7 (18-178)||(24782581-24782741)
chr7 (17-83)||(17864136-17864202)
chr7 (17-83)||(17867415-17867481)
chr7 (29-108)||(294082-294161)
chr7 (194-237)||(6966441-6966484)
chr7 (31-108)||(33312154-33312231)
chr7 (24-132)||(23760624-23760731)
chr7 (194-237)||(24782736-24782779)
chr7 (17-66)||(1309920-1309969)
[»] chr6 (8 HSPs)
chr6 (17-238)||(19665572-19665793)
chr6 (17-237)||(15534226-15534425)
chr6 (17-108)||(15537438-15537529)
chr6 (17-83)||(14794764-14794830)
chr6 (17-83)||(32705336-32705402)
chr6 (17-83)||(14789738-14789802)
chr6 (29-83)||(1837602-1837656)
chr6 (181-237)||(15537560-15537616)
[»] chr5 (9 HSPs)
chr5 (17-237)||(26713252-26713451)
chr5 (17-237)||(26982990-26983189)
chr5 (17-108)||(33574265-33574356)
chr5 (17-83)||(34405006-34405072)
chr5 (181-237)||(33574387-33574443)
chr5 (29-83)||(14617490-14617544)
chr5 (24-108)||(15533239-15533323)
chr5 (139-178)||(33574366-33574405)
chr5 (24-108)||(15543421-15543505)
[»] chr4 (6 HSPs)
chr4 (17-108)||(12171159-12171250)
chr4 (17-83)||(651520-651586)
chr4 (17-83)||(648246-648312)
chr4 (181-237)||(12171281-12171337)
chr4 (29-83)||(26063735-26063789)
chr4 (139-178)||(12171260-12171299)
[»] chr1 (4 HSPs)
chr1 (17-83)||(10759279-10759345)
chr1 (17-83)||(13495195-13495261)
chr1 (17-83)||(13492401-13492467)
chr1 (29-83)||(32506918-32506972)
[»] chr2 (4 HSPs)
chr2 (17-83)||(4843066-4843132)
chr2 (17-100)||(31625662-31625745)
chr2 (29-83)||(36326048-36326102)
chr2 (24-108)||(31527512-31527596)
[»] scaffold0665 (1 HSPs)
scaffold0665 (40-83)||(707-750)
[»] scaffold0500 (1 HSPs)
scaffold0500 (32-108)||(1822-1898)
[»] scaffold0115 (1 HSPs)
scaffold0115 (17-108)||(54-145)
[»] scaffold0063 (2 HSPs)
scaffold0063 (32-104)||(8034-8106)
scaffold0063 (32-104)||(13137-13209)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 22627443 - 22627223
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccaccgatgaagagaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22627443 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccaccgatgaagagaa 22627344  T
Q  117 atcggccaccgatttttcttgtaattttgagctttagcctcgtgaaaaatcggccaccgattgagaaaaatcggcccccgatttggtactttctgggcac 216  Q
    |||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22627343 atcggccaccgatttttgctgcaattttgagctttagcctcgtgaaaaatcggccaccgattgagaaaaatcggccaccgatttggtactttctgggcac 22627244  T
Q  217 gcgttctgtcgaaatcggcca 237  Q
    ||||||||| |||||||||||    
T  22627243 gcgttctgttgaaatcggcca 22627223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 11139679 - 11139518
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccaccgatgaagagaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11139679 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccaccgatgaagagaa 11139580  T
Q  117 atcggccaccgatttttcttgtaattttgagctttagcctcgtgaaaaatcggccaccgatt 178  Q
    |||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||    
T  11139579 atcggccaccgatttttgctgcaattttgagctttagcctcgtgaaaaatcggccaccgatt 11139518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 39564594 - 39564506
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccacc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39564594 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccacc 39564506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 11139536 - 11139480
Alignment:
Q  181 gaaaaatcggcccccgatttggtactttctgggcacgcgttctgtcgaaatcggcca 237  Q
    |||||||||||| |||||||||||||||||||||||||||||| | |||||||||||    
T  11139536 gaaaaatcggccaccgatttggtactttctgggcacgcgttctattgaaatcggcca 11139480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 39564518 - 39564454
Alignment:
Q  114 gaaatcggccaccgatttttcttgtaattttgagctttagcctcgtgaaaaatcggccaccgatt 178  Q
    ||||||||||||| ||||||  || ||||||||||||| ||||||||||||||||||||||||||    
T  39564518 gaaatcggccaccaatttttgctgcaattttgagctttggcctcgtgaaaaatcggccaccgatt 39564454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 39564472 - 39564416
Alignment:
Q  181 gaaaaatcggcccccgatttggtactttctgggcacgcgttctgtcgaaatcggcca 237  Q
    |||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||    
T  39564472 gaaaaatcggccaccgatttggtactttctgggcacacgctctgttgaaatcggcca 39564416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 9124 - 9344
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccaccgatgaagagaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9124 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccaccgatgaagagaa 9223  T
Q  117 atcggccaccgatttttcttgtaattttgagctttagcctcgtgaaaaatcggccaccgattgagaaaaatcggcccccgatttggtactttctgggcac 216  Q
    |||||||||||||||||  || |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9224 atcggccaccgatttttgctgcaattttgagctttagcttcgtgaaaaatcggccaccgattgagaaaaatcggccgccgatttggtactttctgggcac 9323  T
Q  217 gcgttctgtcgaaatcggcca 237  Q
    ||||||||| ||||| |||||    
T  9324 gcgttctgttgaaattggcca 9344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 35773660 - 35773440
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccaccgatgaagagaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||  ||||||    
T  35773660 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaaccggccatctattgagagaa 35773561  T
Q  117 atcggccaccgatttttcttgtaattttgagctttagcctcgtgaaaaatcggccaccgattgagaaaaatcggcccccgatttggtactttctgggcac 216  Q
    |||||||||||||||||  || ||||||||||||| ||||||||||||||||||| |||||| |||||||| |||| ||||||||||| ||||||||||     
T  35773560 atcggccaccgatttttgctgcaattttgagctttggcctcgtgaaaaatcggcccccgattaagaaaaattggccaccgatttggtaatttctgggcat 35773461  T
Q  217 gcgttctgtcgaaatcggcca 237  Q
    ||||||| | |||||||||||    
T  35773460 gcgttcttttgaaatcggcca 35773440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 6966285 - 6966446
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccaccgatgaagagaa 116  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6966285 aatttttggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccaccgatgaagagaa 6966384  T
Q  117 atcggccaccgatttttcttgtaattttgagctttagcctcgtgaaaaatcggccaccgatt 178  Q
    |||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||    
T  6966385 atcggccaccgatttttgctgcaattttgagctttagcctcgtgaaaaatcggccaccgatt 6966446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 24782581 - 24782741
Alignment:
Q  18 attttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccaccgatgaagagaaa 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||    
T  24782581 atttgaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagtttttaagattggaaatcggccaccgattgagagaaa 24782680  T
Q  118 tcggccaccgatttttcttgtaattttgagctttagcctcgtgaaaaatcggccaccgatt 178  Q
    || |||||||||||||  || ||||||||||||| || |||||||||||||||||||||||    
T  24782681 tcagccaccgatttttgctgcaattttgagctttggcgtcgtgaaaaatcggccaccgatt 24782741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 17864202 - 17864136
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17864202 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaacaagaaattgaagttt 17864136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 17867481 - 17867415
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt 83  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17867481 aattttaggagttatttattgtaattcatggagttgcaagctacaaaagaacaagaaattgaagttt 17867415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 294082 - 294161
Alignment:
Q  29 tatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccaccgat 108  Q
    |||| ||||| |||||||||| | | ||||||||||||| |||||||||||||||  |||| ||||| ||||||||||||    
T  294082 tattcattgtgattcatggagctcccagctacaaaagaacaagaaattgaagtttagaagactggaattcggccaccgat 294161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 6966441 - 6966484
Alignment:
Q  194 ccgatttggtactttctgggcacgcgttctgtcgaaatcggcca 237  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  6966441 ccgatttggtactttctgggcacgcgttctgttgaaatcggcca 6966484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 33312154 - 33312231
Alignment:
Q  31 tttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccaccgat 108  Q
    ||||||| ||||||||||| ||||||| ||||||||  |||||| ||||||||  |  ||||||||||||||||||||    
T  33312154 tttattggaattcatggagctgcaagccacaaaagacaaagaaaatgaagtttgaagtattggaaatcggccaccgat 33312231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 23760731 - 23760624
Alignment:
Q  24 ggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccaccgatgaagagaaatcggcc 123  Q
    |||||| ||||||| |||||||| || |||||||  |||||||  |||||| ||||||||  |  ||||||||||||||||||||  ||| | |||||||    
T  23760731 ggggttttttattggaattcatgaagctgcaagccgcaaaagacaaagaaaatgaagtttgaagtattggaaatcggccaccgat-tagatagatcggcc 23760633  T
Q  124 accgatttt 132  Q
    |||||||||    
T  23760632 accgatttt 23760624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 24782736 - 24782779
Alignment:
Q  194 ccgatttggtactttctgggcacgcgttctgtcgaaatcggcca 237  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||    
T  24782736 ccgatttggtaatttctgggcacgcattctgttgaaatcggcca 24782779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 1309969 - 1309920
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaaga 66  Q
    ||||||||| | |||| ||||||||| |||||||||||||| ||||||||    
T  1309969 aattttaggtgatattcattgtaatttatggagttgcaagccacaaaaga 1309920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 19665793 - 19665572
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccaccgatgaagagaa 116  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||    
T  19665793 aattttaggggttatttattgtaattcatggagttccaagctacaaaagaagaagaaattgaagtttttaagattggaaatcggccaccgattgagagaa 19665694  T
Q  117 atcggccaccgatttttcttgtaattttgagctttagcctcgtgaaaaatcggccaccgattgagaaaaatcggcccccgatttggtactttctgggcac 216  Q
    ||||||||||||||| |  || ||||||||||||| |||||||||||||||||||||||| | ||||||||||||| ||||||||||| ||| ||||| |    
T  19665693 atcggccaccgatttatgctgcaattttgagctttggcctcgtgaaaaatcggccaccgaataagaaaaatcggccaccgatttggtaatttatgggctc 19665594  T
Q  217 gcgttctgtcgaaatcggccat 238  Q
    | ||| ||  ||||||||||||    
T  19665593 gtgttttgatgaaatcggccat 19665572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 15534226 - 15534425
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccaccgatgaagagaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |               
T  15534226 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaacaaattgaagttttcaagattggaaatcggccatc----------- 15534314  T
Q  117 atcggccaccgatttttcttgtaattttgagctttagcctcgtgaaaaatcggccaccgattgagaaaaatcggcccccgatttggtactttctgggcac 216  Q
              |||||||  || |||||| |||||| |||||||||||||||||||| ||||| ||||||||||||| ||||||||||| |||||||||||    
T  15534315 ----------gatttttgctgcaatttttagctttggcctcgtgaaaaatcggccatcgattaagaaaaatcggccaccgatttggtaatttctgggcac 15534404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 15537438 - 15537529
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccaccgat 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  15537438 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcagccaccgat 15537529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 14794764 - 14794830
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14794764 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaacaagaaattgaagttt 14794830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 32705402 - 32705336
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32705402 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaacaagaaattgaagttt 32705336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 14789738 - 14789802
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt 83  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||    
T  14789738 aattttaggggttatttattg--attcatggagttgcaagctacaaaagaacaagaaattgaagttt 14789802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 1837602 - 1837656
Alignment:
Q  29 tatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt 83  Q
    |||| ||||| |||||||||| |||||||||||||| || |||||||||||||||    
T  1837602 tattcattgtgattcatggagctgcaagctacaaaaaaacaagaaattgaagttt 1837656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 15537560 - 15537616
Alignment:
Q  181 gaaaaatcggcccccgatttggtactttctgggcacgcgttctgtcgaaatcggcca 237  Q
    |||||||| ||| ||||||||||| ||| |||||||| ||||| | |||||||||||    
T  15537560 gaaaaatcagccaccgatttggtaatttatgggcacgtgttcttttgaaatcggcca 15537616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 26713451 - 26713252
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccaccgatgaagagaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                         
T  26713451 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaa--------------------- 26713373  T
Q  117 atcggccaccgatttttcttgtaattttgagctttagcctcgtgaaaaatcggccaccgattgagaaaaatcggcccccgatttggtactttctgggcac 216  Q
    |||||||||||||||||  |  ||||||||||||| |||| ||||||||||||||||||||| |||||||||||||  |||||||||||||| |||||||    
T  26713372 atcggccaccgatttttgctacaattttgagctttggccttgtgaaaaatcggccaccgattaagaaaaatcggccatcgatttggtactttttgggcac 26713273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 26983189 - 26982990
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccaccgatgaagagaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                         
T  26983189 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaa--------------------- 26983111  T
Q  117 atcggccaccgatttttcttgtaattttgagctttagcctcgtgaaaaatcggccaccgattgagaaaaatcggcccccgatttggtactttctgggcac 216  Q
    |||||||||||||||||  |  ||||||||||||| |||| ||||||||||||||||||||| |||||||||||||  |||||||||||||| |||||||    
T  26983110 atcggccaccgatttttgctacaattttgagctttggccttgtgaaaaatcggccaccgattaagaaaaatcggccatcgatttggtactttttgggcac 26983011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 33574265 - 33574356
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccaccgat 108  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33574265 aattttaagggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattaaagttttcaagattggaaatcggccaccgat 33574356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 34405006 - 34405072
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt 83  Q
    |||||| |||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||    
T  34405006 aatttttggggttatttattgtaattcattgagttgcaagctacagaagaacaagaaattgaagttt 34405072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 33574387 - 33574443
Alignment:
Q  181 gaaaaatcggcccccgatttggtactttctgggcacgcgttctgtcgaaatcggcca 237  Q
    |||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||    
T  33574387 gaaaaatcggccaccgatttggtactttctaggcacgcgttctgttgaaatcggcca 33574443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 14617544 - 14617490
Alignment:
Q  29 tatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt 83  Q
    |||| ||||| |||||||||| ||||||||||||||||| |||||||||||||||    
T  14617544 tattcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagttt 14617490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 15533323 - 15533239
Alignment:
Q  24 ggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccaccgat 108  Q
    |||||| ||||||| |||||||| || |||||||  |||||||| |||||| ||||||||  |  ||||||||||||||||||||    
T  15533323 ggggttttttattggaattcatgaagctgcaagccgcaaaagaaaaagaaaatgaagtttgaagtattggaaatcggccaccgat 15533239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 178
Target Start/End: Original strand, 33574366 - 33574405
Alignment:
Q  139 aattttgagctttagcctcgtgaaaaatcggccaccgatt 178  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  33574366 aattttgagctttggcctcgtgaaaaatcggccaccgatt 33574405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 15543505 - 15543421
Alignment:
Q  24 ggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccaccgat 108  Q
    |||||| ||||||| |||||||| || |||||||  |||||||  |||||| ||||||||  |  ||||||||||||||||||||    
T  15543505 ggggttttttattggaattcatgaagctgcaagccgcaaaagacaaagaaaatgaagtttgaagtattggaaatcggccaccgat 15543421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 12171159 - 12171250
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccaccgat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12171159 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagtttgcaagattggaaatcggccaccgat 12171250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 651586 - 651520
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  651586 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaacaagaaattgaagttt 651520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 648312 - 648246
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt 83  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  648312 aattttaggggttatttattgtcattcatggagttgcaagctacaaaagaacaagaaattgaagttt 648246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 12171281 - 12171337
Alignment:
Q  181 gaaaaatcggcccccgatttggtactttctgggcacgcgttctgtcgaaatcggcca 237  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  12171281 gaaaaatcggccaccgatttggtactttctgggcacgcgttctgttgaaatcggcca 12171337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 26063789 - 26063735
Alignment:
Q  29 tatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt 83  Q
    |||| ||||| |||||||||| ||||||||||||||||| |||||||||||||||    
T  26063789 tattcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagttt 26063735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 178
Target Start/End: Original strand, 12171260 - 12171299
Alignment:
Q  139 aattttgagctttagcctcgtgaaaaatcggccaccgatt 178  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  12171260 aattttgagctttggcatcgtgaaaaatcggccaccgatt 12171299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 10759279 - 10759345
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10759279 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaacaagaaattgaagttt 10759345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 13495195 - 13495261
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt 83  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  13495195 aattttaggggttatttattgttattcatggagttgcaagctacaaaagaacaagaaattgaagttt 13495261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 13492401 - 13492467
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt 83  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  13492401 aattttagggattatttattgtaatttatggagttgcaagctacaaaagaacaagaaattgaagttt 13492467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 32506972 - 32506918
Alignment:
Q  29 tatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt 83  Q
    |||| ||||| |||||||||| ||||||||||||||||| |||||||||||||||    
T  32506972 tattcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagttt 32506918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 4843132 - 4843066
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt 83  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  4843132 aattttaggggttatttattgtaattaatggagttgcaagctacaaaagaacaagaaattgaagttt 4843066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 31625662 - 31625745
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcgg 100  Q
    |||||||||||||||| ||| | |||||||||||||||||| ||||||||  |||||| ||||||||  || || |||||||||    
T  31625662 aattttaggggttattcattttgattcatggagttgcaagccacaaaagacaaagaaaatgaagtttcaaatataggaaatcgg 31625745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 36326048 - 36326102
Alignment:
Q  29 tatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttt 83  Q
    |||| ||||| |||||||||| ||||||||||||||||| |||||||||||||||    
T  36326048 tattcattgtgattcatggagctgcaagctacaaaagaacaagaaattgaagttt 36326102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 31527512 - 31527596
Alignment:
Q  24 ggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccaccgat 108  Q
    |||||| ||||||| |||||||| || |||||||| |||||||  |||||| ||||||||  |  ||||||||||||||||||||    
T  31527512 ggggttttttattggaattcatgaagctgcaagctgcaaaagacaaagaaaatgaagtttgaagtattggaaatcggccaccgat 31527596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 750 - 707
Alignment:
Q  40 attcatggagttgcaagctacaaaagaagaagaaattgaagttt 83  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  750 attcatggagttgcaagctacaaaagaacaagaaattgaagttt 707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 1822 - 1898
Alignment:
Q  32 ttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccaccgat 108  Q
    |||||| |||||||| || ||||||| ||||||||  |||||| ||||||||  || ||||||||||||||||||||    
T  1822 ttattggaattcatgaagctgcaagccacaaaagacaaagaaaatgaagtttgaaatattggaaatcggccaccgat 1898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 145 - 54
Alignment:
Q  17 aattttaggggttatttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccaccgat 108  Q
    ||||||||||||| ||||||| |||||||  || |||||||  ||||||   |||||| ||||||||  |  ||||||||||||||||||||    
T  145 aattttaggggttttttattggaattcattaagctgcaagccgcaaaagtcaaagaaaatgaagtttgaagtattggaaatcggccaccgat 54  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 8106 - 8034
Alignment:
Q  32 ttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccac 104  Q
    |||||| |||||||| || ||||||| ||||||||  |||||| ||||||||  |  ||||||||||||||||    
T  8106 ttattggaattcatgaagctgcaagccacaaaagacaaagaaaatgaagtttgaattattggaaatcggccac 8034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 13209 - 13137
Alignment:
Q  32 ttattgtaattcatggagttgcaagctacaaaagaagaagaaattgaagttttcaagattggaaatcggccac 104  Q
    |||||| |||||||| || ||||||| ||||||||  |||||| ||||||||  |  ||||||||||||||||    
T  13209 ttattggaattcatgaagctgcaagccacaaaagacaaagaaaatgaagtttgaagtattggaaatcggccac 13137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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