View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2752_low_43 (Length: 231)
Name: NF2752_low_43
Description: NF2752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2752_low_43 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 5379680 - 5379470
Alignment:
| Q |
1 |
aaaaatgctttggaattgaccaaataaaaaggccatgagagaaaaataatgaaaacctaattataaatgcctcgttcaccaagcattattgttgtgacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5379680 |
aaaaatgctttggaattgaccaaataaaaaggccatgagagaaaaataatgaaaacctaattataaatgcctcgtttaccaagcattattgttgtgacca |
5379581 |
T |
|
| Q |
101 |
ttcgccaacgcaaaagtcccaaaacgcgaccaatcgtccacttccattatggcgtccactgttctaccccaaccactgaatactacgtcctttgcattaa |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
5379580 |
ttagccaacgcaaaagtcccaaaacgcgaccaatcgtccatttccattatggcgtccactgttctaccccaaccactgaatgctatgtcctttgcattaa |
5379481 |
T |
|
| Q |
201 |
aatgtcattta |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
5379480 |
aatgtcattta |
5379470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 19002328 - 19002118
Alignment:
| Q |
1 |
aaaaatgctttggaattgaccaaataaaaaggccatgagagaaaaataatgaaaacctaattataaatgcctcgttcaccaagcattattgttgtgacca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19002328 |
aaaaatgctttggaattgaccaaataaaaagaccaagagagataaataatgaaaacctaattataaatgcctcgttcaccaagcattattgttgtgacca |
19002229 |
T |
|
| Q |
101 |
ttcgccaacgcaaaagtcccaaaacgcgaccaatcgtccacttccattatggcgtccactgttctaccccaaccactgaatactacgtcctttgcattaa |
200 |
Q |
| |
|
|| ||||||||||||||| ||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
19002228 |
ttagccaacgcaaaagtcgcaaaatgcgaccgatcgtccacttccattgtggcgtccactgttctaccccaaccactgaatgctatgtcctttgcattaa |
19002129 |
T |
|
| Q |
201 |
aatgtcattta |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
19002128 |
aatgtcattta |
19002118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 22680507 - 22680433
Alignment:
| Q |
1 |
aaaaatgctttggaattgaccaaataaaaaggccatgagaga-aaaataatgaaaacctaattataaatgcctcg |
74 |
Q |
| |
|
|||||| |||||||||||| ||| ||||||| ||| |||| | |||| ||||||||||||||| ||||||||||| |
|
|
| T |
22680507 |
aaaaattctttggaattgaacaactaaaaagaccaagagaaagaaaagaatgaaaacctaattgtaaatgcctcg |
22680433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 23220697 - 23220486
Alignment:
| Q |
1 |
aaaaatgctttggaattgaccaaataaaaaggccatgagagaaaaataatgaaaacctaattataaatgcctcgttcaccaagcattattgttgtgacca |
100 |
Q |
| |
|
|||||| |||||||||||| ||| ||||||| ||| |||| ||||| |||||||||||||| |||||||||||||||||||||||| |||| |||| || |
|
|
| T |
23220697 |
aaaaattctttggaattgaacaactaaaaagaccaagagaaaaaaaggatgaaaacctaattgtaaatgcctcgttcaccaagcattcttgtcgtgatca |
23220598 |
T |
|
| Q |
101 |
ttcgccaacgcaaaagtcccaaaacgcgaccaatcgtccacttccattatggcgtccactgttctaccccaaccactgaatactacgtcctttgcattaa |
200 |
Q |
| |
|
| ||||||| | ||||| ||||| || ||||| ||||||||||||| ||| || |||||||||||| ||||||||| ||| || || ||||||| |
|
|
| T |
23220597 |
tgagccaacgtagaagtcacaaaatgcatccaattgtccacttccattgtggggtttgatgttctaccccagccactgaatgctatgtttttagcattaa |
23220498 |
T |
|
| Q |
201 |
aatgtcatttat |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
23220497 |
aatgtcatttat |
23220486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 22644192 - 22644266
Alignment:
| Q |
1 |
aaaaatgctttggaattgaccaaataaaaaggccatgagaga-aaaataatgaaaacctaattataaatgcctcg |
74 |
Q |
| |
|
|||||| |||||||||||| ||| ||||||| ||| |||| | |||| ||||||||||||||| ||||||||||| |
|
|
| T |
22644192 |
aaaaatactttggaattgaacaactaaaaagaccaagagaaagaaaagaatgaaaacctaattgtaaatgcctcg |
22644266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 27032231 - 27032157
Alignment:
| Q |
1 |
aaaaatgctttggaattgaccaaataaaaaggccatgagaga-aaaataatgaaaacctaattataaatgcctcg |
74 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||| ||| |||| | |||| ||||||||||||||| ||||||||||| |
|
|
| T |
27032231 |
aaaaatgctttagaattgaacaactaaaaagaccaagagaaagaaaagaatgaaaacctaattgtaaatgcctcg |
27032157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University