View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2752_low_6 (Length: 561)
Name: NF2752_low_6
Description: NF2752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2752_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 520; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 12 - 543
Target Start/End: Complemental strand, 43015644 - 43015113
Alignment:
| Q |
12 |
atgaacatgtgtcaaacactagacatatcttcaatcataagtgtcttactgtataatatatgtaacttacttcatcatagctttttcgaaatgggatgaa |
111 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43015644 |
atgaacatgtgtcaaacactagacatatcttcaatcagaagtgtcttactgtataatatatgtaacttacttcatcatagctttttcgaaatgggatgaa |
43015545 |
T |
|
| Q |
112 |
gccaaaatgatcagatttaaggtgttgaatatccaaagcatttgtgaagcttgttaaaggactagggacaccaacaacagcagacatttcatctctatga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43015544 |
gccaaaatgatcagatttaaggtgttgaatatccaaagcatttgtgaagcttgttaaaggactagggacaccaacaacagcagacatttcatctctatga |
43015445 |
T |
|
| Q |
212 |
atctgagtaacaatttccttagaagaagaacttccacttccactatctcttcttccattgatattataattaggttctccaccacttccttcaccggttg |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43015444 |
atctgagtaacaatttccttagaagaagaacttccacttccactatctcttcttccattgatattataattaggttctccaccacttccttcaccagttg |
43015345 |
T |
|
| Q |
312 |
ttgttgttgcactaattattctttgattattatcagaccaattacactgtcttggctgtgtctgataaaatatctttgaaacaacaagctctccttcttt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43015344 |
ttgttgttgcactaattattctttgattattatcagaccaattacactgtcttggctgtgtctgataaaatatctttgaaacaacaagctctccttcttt |
43015245 |
T |
|
| Q |
412 |
ctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgggttttcgattctttccaaagttggtgtagagaacaagaattttc |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43015244 |
ctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgggttttcgattctttccgaagttggtgtagagaacaagaattttc |
43015145 |
T |
|
| Q |
512 |
ttgcaacctttttgtttaccattaaccataac |
543 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
43015144 |
ttgcaacctttttgtttaccattaaccataac |
43015113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 522
Target Start/End: Original strand, 28948724 - 28948862
Alignment:
| Q |
384 |
tctttgaaacaacaagctctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgggttttcgattctttcc |
483 |
Q |
| |
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||||||||||||| | || || |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| || || | | |||| |
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| T |
28948724 |
tctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatcacccaattggtcttctcaggcttcttttgccttcc |
28948823 |
T |
|
| Q |
484 |
aaagttggtgtagagaacaagaattttcttgcaaccttt |
522 |
Q |
| |
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| ||||||||||||| || || || |||||| ||||||| |
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| T |
28948824 |
atagttggtgtagaggactagtatcttcttgaaaccttt |
28948862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 498
Target Start/End: Complemental strand, 4235893 - 4235754
Alignment:
| Q |
359 |
tgtcttggctgtgtctgataaaatatctttgaaacaacaagctctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcg |
458 |
Q |
| |
|
||||| ||||||||||| || || ||||||||| |||| | ||||| ||| | |||||||||| ||||||||||||||||||||||||||||| | |
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| T |
4235893 |
tgtctaggctgtgtctggtagaagatctttgaagcaacgaattctccatctctttcttcttcattcataccaagatggtattgatgcatcacccaattag |
4235794 |
T |
|
| Q |
459 |
tcttctcgggttttcgattctttccaa-agttggtgtagag |
498 |
Q |
| |
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||||||| ||||||| | ||||| ||| ||||||||||||| |
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| T |
4235793 |
tcttctctggttttcca-tctttgcaatagttggtgtagag |
4235754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 404 - 513
Target Start/End: Complemental strand, 38887137 - 38887028
Alignment:
| Q |
404 |
ccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgggttttcgattctttccaaagttggtgtagagaacaa |
503 |
Q |
| |
|
||||||||||| ||||||| | ||||||||||||||| ||||| |||||||| || ||||| || |||| | ||||| |||| ||||| || |||| |
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| T |
38887137 |
ccttctttctcctcttcattgtttccaagatggtattggtgcataacccaatttgttttctctggctttctttgctttctgtagttagtgtaaagcacaa |
38887038 |
T |
|
| Q |
504 |
gaattttctt |
513 |
Q |
| |
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|||||||||| |
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|
| T |
38887037 |
gaattttctt |
38887028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 523
Target Start/End: Complemental strand, 30505981 - 30505860
Alignment:
| Q |
402 |
ctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgggttttcgattctttccaaagttggtgtagagaac |
501 |
Q |
| |
|
||||||||||||||||||||| |||||||| || ||||||||||||||||| || ||||| || |||| | |||||| |||| ||||| || || |
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| T |
30505981 |
ctccttctttctcttcttcatcactcccaagatgatactgatgcatcacccaatttgttttctctggctttctttgttttccatagtttgtgtaaagtac |
30505882 |
T |
|
| Q |
502 |
aagaattttcttgcaacctttt |
523 |
Q |
| |
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||||||||| ||| |||||||| |
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|
| T |
30505881 |
aagaatttttttgtaacctttt |
30505860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 522
Target Start/End: Original strand, 34829853 - 34830007
Alignment:
| Q |
368 |
tgtgtctgataaaatatctttgaaacaacaagctctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgg |
467 |
Q |
| |
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||||| || ||||| | |||||||||||| | || || |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| | |
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| T |
34829853 |
tgtgtttggtaaaacacctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatcacccaattggtcttctcag |
34829952 |
T |
|
| Q |
468 |
gttttcgattctttccaaagttggtgtagagaacaagaattttcttgcaaccttt |
522 |
Q |
| |
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| || | | ||||| ||||||||||||| || || || |||||| ||||||| |
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|
| T |
34829953 |
gcttcttttgccttccatagttggtgtagaggactagtatcttcttgaaaccttt |
34830007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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