View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2752_low_7 (Length: 536)

Name: NF2752_low_7
Description: NF2752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2752_low_7
NF2752_low_7
[»] chr7 (16 HSPs)
chr7 (270-527)||(21407572-21407823)
chr7 (20-231)||(21407322-21407538)
chr7 (169-223)||(9522912-9522966)
chr7 (170-216)||(23205376-23205422)
chr7 (163-229)||(27279404-27279470)
chr7 (169-223)||(35142156-35142210)
chr7 (166-231)||(3672551-3672616)
chr7 (169-234)||(30006088-30006153)
chr7 (175-228)||(34773237-34773290)
chr7 (172-233)||(45645233-45645294)
chr7 (183-223)||(6768714-6768754)
chr7 (174-230)||(15433459-15433515)
chr7 (163-223)||(31525386-31525446)
chr7 (188-220)||(34382946-34382978)
chr7 (192-224)||(39706643-39706675)
chr7 (170-218)||(45045255-45045302)
[»] chr8 (9 HSPs)
chr8 (166-215)||(24195246-24195295)
chr8 (175-231)||(32115405-32115461)
chr8 (166-216)||(19734312-19734362)
chr8 (169-215)||(39433410-39433456)
chr8 (181-227)||(41472490-41472536)
chr8 (166-215)||(2554227-2554276)
chr8 (191-228)||(8694132-8694169)
chr8 (180-229)||(26991758-26991807)
chr8 (167-215)||(40795375-40795423)
[»] chr2 (22 HSPs)
chr2 (170-231)||(29872171-29872232)
chr2 (191-231)||(21497689-21497729)
chr2 (169-229)||(22520217-22520277)
chr2 (169-229)||(27889289-27889349)
chr2 (188-223)||(231600-231635)
chr2 (174-229)||(9537007-9537062)
chr2 (193-232)||(32407561-32407600)
chr2 (188-231)||(32957542-32957585)
chr2 (180-231)||(40967370-40967421)
chr2 (169-223)||(22523019-22523073)
chr2 (166-231)||(833068-833133)
chr2 (166-215)||(2632500-2632549)
chr2 (162-215)||(3903858-3903911)
chr2 (180-229)||(9547410-9547459)
chr2 (184-229)||(12126884-12126929)
chr2 (171-223)||(8920490-8920542)
chr2 (169-229)||(9383210-9383270)
chr2 (193-229)||(15333153-15333189)
chr2 (197-229)||(19156165-19156197)
chr2 (180-216)||(19159952-19159988)
chr2 (180-224)||(29979930-29979974)
chr2 (169-229)||(40546316-40546376)
[»] chr4 (18 HSPs)
chr4 (169-231)||(21623418-21623480)
chr4 (166-215)||(19479492-19479541)
chr4 (163-215)||(27655725-27655777)
chr4 (169-239)||(50668340-50668410)
chr4 (170-227)||(48251911-48251968)
chr4 (172-220)||(12192501-12192549)
chr4 (166-229)||(39489603-39489666)
chr4 (169-223)||(2448149-2448203)
chr4 (169-227)||(10069091-10069149)
chr4 (174-228)||(17058991-17059045)
chr4 (192-229)||(3299095-3299132)
chr4 (162-215)||(4485848-4485901)
chr4 (163-208)||(7282551-7282596)
chr4 (176-229)||(25198262-25198315)
chr4 (167-215)||(16067936-16067984)
chr4 (176-232)||(26033282-26033338)
chr4 (163-215)||(36253367-36253419)
chr4 (168-216)||(42756120-42756168)
[»] chr3 (15 HSPs)
chr3 (166-216)||(15690937-15690987)
chr3 (169-227)||(36692173-36692231)
chr3 (162-223)||(5117201-5117262)
chr3 (169-216)||(1744004-1744051)
chr3 (166-228)||(14217980-14218042)
chr3 (167-229)||(25441501-25441563)
chr3 (187-229)||(46093134-46093176)
chr3 (176-229)||(2753705-2753758)
chr3 (174-223)||(33404233-33404282)
chr3 (169-230)||(53162198-53162259)
chr3 (193-229)||(20400101-20400137)
chr3 (169-229)||(22722402-22722462)
chr3 (192-228)||(41030188-41030224)
chr3 (175-215)||(43345022-43345062)
chr3 (193-229)||(55126030-55126066)
[»] chr1 (17 HSPs)
chr1 (175-231)||(47070854-47070910)
chr1 (166-215)||(12213990-12214039)
chr1 (163-223)||(28832178-28832238)
chr1 (169-216)||(45190283-45190330)
chr1 (193-231)||(434335-434373)
chr1 (163-209)||(1834466-1834512)
chr1 (175-229)||(41974767-41974821)
chr1 (169-234)||(3157713-3157778)
chr1 (175-216)||(3393582-3393623)
chr1 (162-215)||(3509956-3510009)
chr1 (162-215)||(15382834-15382887)
chr1 (166-223)||(32209845-32209902)
chr1 (169-217)||(8148378-8148426)
chr1 (169-213)||(27449462-27449506)
chr1 (174-230)||(28460254-28460310)
chr1 (168-216)||(32075258-32075306)
chr1 (166-230)||(48100719-48100783)
[»] chr6 (17 HSPs)
chr6 (174-229)||(1535308-1535363)
chr6 (169-228)||(34701147-34701206)
chr6 (166-215)||(12700436-12700485)
chr6 (193-230)||(17329978-17330015)
chr6 (169-229)||(28046179-28046239)
chr6 (169-216)||(3487931-3487978)
chr6 (175-229)||(2473609-2473663)
chr6 (193-231)||(2617204-2617242)
chr6 (169-215)||(9111047-9111093)
chr6 (169-215)||(12318767-12318813)
chr6 (169-234)||(8138454-8138519)
chr6 (188-229)||(21598976-21599017)
chr6 (180-229)||(29335576-29335625)
chr6 (166-215)||(34474224-34474273)
chr6 (169-229)||(9392669-9392729)
chr6 (180-216)||(12904331-12904367)
chr6 (164-216)||(33938693-33938745)
[»] chr5 (12 HSPs)
chr5 (169-228)||(30488925-30488984)
chr5 (175-215)||(3764552-3764592)
chr5 (172-232)||(21657396-21657456)
chr5 (169-228)||(11156837-11156896)
chr5 (167-229)||(31602826-31602888)
chr5 (174-227)||(17985234-17985287)
chr5 (169-226)||(22297385-22297442)
chr5 (175-216)||(27903119-27903160)
chr5 (175-223)||(2705523-2705571)
chr5 (188-232)||(23036705-23036749)
chr5 (163-215)||(32675308-32675360)
chr5 (163-231)||(39610340-39610408)
[»] scaffold0118 (1 HSPs)
scaffold0118 (169-231)||(39998-40060)
[»] scaffold0320 (1 HSPs)
scaffold0320 (163-212)||(15473-15522)
[»] scaffold0053 (1 HSPs)
scaffold0053 (174-223)||(14205-14254)
[»] scaffold0160 (1 HSPs)
scaffold0160 (169-229)||(22911-22971)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 270 - 527
Target Start/End: Original strand, 21407572 - 21407823
Alignment:
Q  270 tagaaaaaagagagcactctaatgttgagatttattattatgcaaggttataatgaagatctcaataaattttatcgttgagatcttcgacataaacctt 369  Q
    ||||||||||||||||||||||| ||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |     
T  21407572 tagaaaaaagagagcactctaatattgagatttattat---gcaaggttataatgaagatctcaataaattttaacgttgagatcttcgacataatc-tc 21407667  T
Q  370 tatttcaaatttcaatttgagggaatcaaattcatatcaagacaaaacatatatttttggttaaataaattattaactggaagtattcaccgactttgtt 469  Q
    |||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  21407668 tatttcaaatttcaatttgaggaaatcaaattcatatcaacacaagacatatattttttgttaaataaattattaattggaagtattcaccgactttgtt 21407767  T
Q  470 gattactaatctttgttagaaaacacacaactctctcgatatatctaattatattctt 527  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||    
T  21407768 gattactaatctttgttagaaa--acacaactctctcgatatatctaattgtattctt 21407823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 21407322 - 21407538
Alignment:
Q  20 acagaaacggaacctacaaataaaaaacaa------gatcaccaaaacagatatgtttagtgcagaggaaactgttctcatttaccttcatctaatctct 113  Q
    ||||||||||||||||||||||||||| ||      |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||    
T  21407322 acagaaacggaacctacaaataaaaaataaaaaaaagatcaccaaaacagatatgtttagtgcaaaggaaactgttctcatttaccttcatctaa--tct 21407419  T
Q  114 aatactaaacattaaacacttattttagtacatatacatataaaaa-agagttcttgtgaacttagttcagttaatatgaacaatacataatatatgcaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||| |||||||||  ||    
T  21407420 aatactaaacattaaacacttattttagtacatatacatataaaaagagagttctcgtgaacttagttcaattaatatgaacaatatataatatatataa 21407519  T
Q  213 ggtttgaggtttaaacctc 231  Q
    |||||| ||||||||||||    
T  21407520 ggtttggggtttaaacctc 21407538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 9522912 - 9522966
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtt 223  Q
    |||||||||| ||||||  |||||||||| |||||||||||||||||||| ||||    
T  9522912 gtgaacttagctcagttggtatgaacaatgcataatatatgcaaggtttggggtt 9522966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 23205422 - 23205376
Alignment:
Q  170 tgaacttagttcagttaatatgaacaatacataatatatgcaaggtt 216  Q
    |||||||||||||||| ||||||| ||||||||||| ||||||||||    
T  23205422 tgaacttagttcagttgatatgaataatacataataaatgcaaggtt 23205376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 27279470 - 27279404
Alignment:
Q  163 gttcttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    ||||| |||||||||||||||||| |||  |||||  |||||||||| ||||||||||||| |||||    
T  27279470 gttctcgtgaacttagttcagttagtatagacaatgtataatatatgtaaggtttgaggttcaaacc 27279404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 35142210 - 35142156
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtt 223  Q
    |||| ||||| |||||| ||||| ||||| |||||||||||||| ||||||||||    
T  35142210 gtgagcttagctcagttgatatggacaatgcataatatatgcaaagtttgaggtt 35142156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 3672616 - 3672551
Alignment:
Q  166 cttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacctc 231  Q
    |||||||  |||| |||||| ||||| ||||||||||||||||||||| | || |||| |||||||    
T  3672616 cttgtgagtttagctcagttgatatggacaatacataatatatgcaagatatggggttcaaacctc 3672551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 30006153 - 30006088
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacctcaac 234  Q
    |||||||||| ||||||  |||||| ||| |||||| ||||||||||||| |||| ||||| ||||    
T  30006153 gtgaacttagctcagttggtatgaataatgcataatgtatgcaaggtttggggttcaaaccccaac 30006088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 34773237 - 34773290
Alignment:
Q  175 ttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaac 228  Q
    |||||||||||  || | ||||| ||||||||||||||||| ||||||||||||    
T  34773237 ttagttcagttggtagggacaatgcataatatatgcaaggtatgaggtttaaac 34773290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 45645294 - 45645233
Alignment:
Q  172 aacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacctcaa 233  Q
    ||||||| |||||| ||| ||||||||||||||||||| ||||| | | ||| |||||||||    
T  45645294 aacttagctcagttgataagaacaatacataatatatgtaaggtctaaagttcaaacctcaa 45645233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 6768754 - 6768714
Alignment:
Q  183 gttaatatgaacaatacataatatatgcaaggtttgaggtt 223  Q
    ||||||| ||||||| ||||||||||||||||| |||||||    
T  6768754 gttaataagaacaatgcataatatatgcaaggtctgaggtt 6768714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 15433515 - 15433459
Alignment:
Q  174 cttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacct 230  Q
    ||||| |||||| ||||| |||||  |||||||||||||||| ||||||| ||||||    
T  15433515 cttagctcagttgatatggacaattaataatatatgcaaggtctgaggttcaaacct 15433459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 31525446 - 31525386
Alignment:
Q  163 gttcttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtt 223  Q
    ||||||||||  |||||||| ||  ||||||||||| ||||||||| ||||||| ||||||    
T  31525446 gttcttgtgagtttagttcaattggtatgaacaatatataatatatacaaggttcgaggtt 31525386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 34382978 - 34382946
Alignment:
Q  188 tatgaacaatacataatatatgcaaggtttgag 220  Q
    |||||| ||||||||||||||||||||||||||    
T  34382978 tatgaataatacataatatatgcaaggtttgag 34382946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 39706643 - 39706675
Alignment:
Q  192 aacaatacataatatatgcaaggtttgaggttt 224  Q
    ||||||||||||||||||||||||||| |||||    
T  39706643 aacaatacataatatatgcaaggtttggggttt 39706675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 45045302 - 45045255
Alignment:
Q  170 tgaacttagttcagttaatatgaacaatacataatatatgcaaggtttg 218  Q
    |||||||| |||||||  ||||| |||||||||||||||||||||||||    
T  45045302 tgaacttacttcagttggtatga-caatacataatatatgcaaggtttg 45045255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 24195246 - 24195295
Alignment:
Q  166 cttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggt 215  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  24195246 cttgtgaacttagctcagttgatatgaacaatacataatatatgcaaggt 24195295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 32115461 - 32115405
Alignment:
Q  175 ttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacctc 231  Q
    ||||||||||||||||| ||||| ||||||||||| |||||| | |||| |||||||    
T  32115461 ttagttcagttaatatggacaatgcataatatatgtaaggttcggggttcaaacctc 32115405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 19734312 - 19734362
Alignment:
Q  166 cttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggtt 216  Q
    ||||| ||||||| ||||||  | |||||||||||||||||||||||||||    
T  19734312 cttgtaaacttagctcagttggtttgaacaatacataatatatgcaaggtt 19734362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 39433410 - 39433456
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggt 215  Q
    |||| ||||| |||||| ||||||||||||||||| |||||||||||    
T  39433410 gtgagcttagctcagttgatatgaacaatacataaaatatgcaaggt 39433456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 41472490 - 41472536
Alignment:
Q  181 cagttaatatgaacaatacataatatatgcaaggtttgaggtttaaa 227  Q
    |||||| ||||||||||  ||||||||||||||||| ||||||||||    
T  41472490 cagttagtatgaacaatgtataatatatgcaaggttcgaggtttaaa 41472536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 2554276 - 2554227
Alignment:
Q  166 cttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggt 215  Q
    ||||||| ||||| |||||| ||||| ||||||||||| |||||||||||    
T  2554276 cttgtgagcttagctcagttgatatggacaatacataaaatatgcaaggt 2554227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 8694169 - 8694132
Alignment:
Q  191 gaacaatacataatatatgcaaggtttgaggtttaaac 228  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  8694169 gaacaatgcataatatatgcaaggtttgagatttaaac 8694132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 26991807 - 26991758
Alignment:
Q  180 tcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    |||||| ||||| ||||| |||||||||||||||||||| |||| |||||    
T  26991807 tcagttgatatggacaatgcataatatatgcaaggtttgtggttcaaacc 26991758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 40795375 - 40795423
Alignment:
Q  167 ttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggt 215  Q
    |||||| ||||  ||||||  ||||||||||||||||||||||||||||    
T  40795375 ttgtgagcttaactcagttggtatgaacaatacataatatatgcaaggt 40795423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 29872232 - 29872171
Alignment:
Q  170 tgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacctc 231  Q
    ||||||||||||||||  |||||||||||||||||||||||||||| | ||||| |||||||    
T  29872232 tgaacttagttcagttggtatgaacaatacataatatatgcaaggtctaaggttcaaacctc 29872171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 21497689 - 21497729
Alignment:
Q  191 gaacaatacataatatatgcaaggtttgaggtttaaacctc 231  Q
    ||||||| |||||||||||||||||| ||||||||||||||    
T  21497689 gaacaatgcataatatatgcaaggttcgaggtttaaacctc 21497729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 22520217 - 22520277
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    |||| ||||||||||||| || ||||||| ||||||||||||||||  ||||||| |||||    
T  22520217 gtgagcttagttcagttagtaagaacaatgcataatatatgcaaggcctgaggttcaaacc 22520277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 27889289 - 27889349
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    |||| |||||||||||||  ||||||||| ||||| ||||| ||||||||||||| |||||    
T  27889289 gtgagcttagttcagttatcatgaacaatgcataaaatatgtaaggtttgaggttcaaacc 27889349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 223
Target Start/End: Complemental strand, 231635 - 231600
Alignment:
Q  188 tatgaacaatacataatatatgcaaggtttgaggtt 223  Q
    |||| |||||||||||||||||||||||||||||||    
T  231635 tatggacaatacataatatatgcaaggtttgaggtt 231600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 9537062 - 9537007
Alignment:
Q  174 cttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    ||||||||||||| || ||||||| | |||||||||||||||||| ||||| ||||    
T  9537062 cttagttcagttagtaagaacaatgcctaatatatgcaaggtttggggtttgaacc 9537007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 32407600 - 32407561
Alignment:
Q  193 acaatacataatatatgcaaggtttgaggtttaaacctca 232  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  32407600 acaatacataatatatgtaaggtttgaggttcaaacctca 32407561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 32957585 - 32957542
Alignment:
Q  188 tatgaacaatacataatatatgcaaggtttgaggtttaaacctc 231  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||    
T  32957585 tatgaacaatgcataatatatgtaaggtttggggtttaaacctc 32957542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 40967421 - 40967370
Alignment:
Q  180 tcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacctc 231  Q
    |||||| ||| | ||||| ||||||||||||||||||||||||| |||||||    
T  40967421 tcagttgataaggacaatgcataatatatgcaaggtttgaggttcaaacctc 40967370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 22523073 - 22523019
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtt 223  Q
    |||| ||||| ||||||  |||| |||||||||||||||||||||||| ||||||    
T  22523073 gtgagcttagctcagttggtatggacaatacataatatatgcaaggttcgaggtt 22523019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 833133 - 833068
Alignment:
Q  166 cttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacctc 231  Q
    |||||||||| || ||||||  |||| ||||| ||||||||||||||||| || ||||||| ||||    
T  833133 cttgtgaactcagctcagttggtatggacaatgcataatatatgcaaggtctggggtttaatcctc 833068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 2632500 - 2632549
Alignment:
Q  166 cttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggt 215  Q
    ||||||||||||||||||||  |||| |||||||||||||| | ||||||    
T  2632500 cttgtgaacttagttcagttgttatgtacaatacataatatgtacaaggt 2632549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 3903911 - 3903858
Alignment:
Q  162 agttcttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggt 215  Q
    ||||| ||||||||||||| |||| || || ||||| |||||||||||||||||    
T  3903911 agttcatgtgaacttagttaagttgatttggacaatgcataatatatgcaaggt 3903858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 9547459 - 9547410
Alignment:
Q  180 tcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    |||||| ||||| ||||| |||||||||||||||||||| |||| |||||    
T  9547459 tcagttgatatggacaatgcataatatatgcaaggtttggggttcaaacc 9547410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 12126884 - 12126929
Alignment:
Q  184 ttaatatgaacaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    |||||||  ||||||||||||||||| ||||||||||||| |||||    
T  12126884 ttaatatagacaatacataatatatgtaaggtttgaggttcaaacc 12126929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 8920490 - 8920542
Alignment:
Q  171 gaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtt 223  Q
    |||||||| ||||||  || | ||| |||||||||||||||||||||||||||    
T  8920490 gaacttaggtcagttggtagggacagtacataatatatgcaaggtttgaggtt 8920542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 9383270 - 9383210
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    |||| ||||| ||||||  |||| ||||| |||||||||||||||||||| ||||| ||||    
T  9383270 gtgagcttagctcagttggtatggacaatgcataatatatgcaaggtttggggtttcaacc 9383210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 15333153 - 15333189
Alignment:
Q  193 acaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  15333153 acaatacataatatatgcaaggtttgatgttcaaacc 15333189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 19156197 - 19156165
Alignment:
Q  197 tacataatatatgcaaggtttgaggtttaaacc 229  Q
    ||||||||||||||||||||||||||| |||||    
T  19156197 tacataatatatgcaaggtttgaggttcaaacc 19156165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 19159952 - 19159988
Alignment:
Q  180 tcagttaatatgaacaatacataatatatgcaaggtt 216  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  19159952 tcagttgatatgaacaatgcataatatatgcaaggtt 19159988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 29979974 - 29979930
Alignment:
Q  180 tcagttaatatgaacaatacataatatatgcaaggtttgaggttt 224  Q
    |||||||||| ||||||| ||||||||||||||||| || |||||    
T  29979974 tcagttaataagaacaatgcataatatatgcaaggtatggggttt 29979930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 40546316 - 40546376
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    |||| ||||| |||||||||| ||||||| |||||||||||||| ||| || ||| |||||    
T  40546316 gtgagcttagctcagttaataagaacaatgcataatatatgcaatgttcgatgttcaaacc 40546376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 21623480 - 21623418
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacctc 231  Q
    |||||||||||||||||  || | ||||| ||||||||||||||||| |||||||||||||||    
T  21623480 gtgaacttagttcagttggtagggacaatgcataatatatgcaaggtctgaggtttaaacctc 21623418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 19479541 - 19479492
Alignment:
Q  166 cttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggt 215  Q
    ||||||| ||||| |||||||||||||||||| |||||||||||||||||    
T  19479541 cttgtgagcttagctcagttaatatgaacaatgcataatatatgcaaggt 19479492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 27655725 - 27655777
Alignment:
Q  163 gttcttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggt 215  Q
    ||||||||||||||||||||||| |||  |||||| |||||||||||||||||    
T  27655725 gttcttgtgaacttagttcagttgatagaaacaatgcataatatatgcaaggt 27655777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 50668340 - 50668410
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacctcaactatca 239  Q
    ||||||||| |||||||  |||||||||||||||||||||| |||||| | |||| ||||| |||| ||||    
T  50668340 gtgaacttaattcagttggtatgaacaatacataatatatgtaaggttcggggttcaaaccccaaccatca 50668410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 48251968 - 48251911
Alignment:
Q  170 tgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaa 227  Q
    |||| |||| |||||| |||||||||||  |||||||||||||||||||| |||||||    
T  48251968 tgaatttagctcagttgatatgaacaatgtataatatatgcaaggtttgaagtttaaa 48251911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 12192549 - 12192501
Alignment:
Q  172 aacttagttcagttaatatgaacaatacataatatatgcaaggtttgag 220  Q
    ||||||||||| ||  |||||||||| ||||||||||||||||||||||    
T  12192549 aacttagttcaattggtatgaacaatgcataatatatgcaaggtttgag 12192501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 39489603 - 39489666
Alignment:
Q  166 cttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    ||||||| |||| ||||||| ||| |||||||||||| ||||||||||||| | |||| |||||    
T  39489603 cttgtgagcttaattcagttgataggaacaatacatagtatatgcaaggttcggggttcaaacc 39489666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 2448149 - 2448203
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtt 223  Q
    |||||||||||||||||  |||||||||||||||| ||||| ||||  |||||||    
T  2448149 gtgaacttagttcagttggtatgaacaatacataaaatatgtaaggaatgaggtt 2448203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 10069149 - 10069091
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaa 227  Q
    |||||||||| ||||||  ||||||||||  ||||||||||||| ||||| ||||||||    
T  10069149 gtgaacttagctcagttggtatgaacaatgtataatatatgcaaagtttggggtttaaa 10069091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 17059045 - 17058991
Alignment:
Q  174 cttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaac 228  Q
    ||||| ||||||  ||||||||||| |||| |||||||||||| |||||||||||    
T  17059045 cttagatcagttggtatgaacaatatataaaatatgcaaggttcgaggtttaaac 17058991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 3299132 - 3299095
Alignment:
Q  192 aacaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  3299132 aacaatgcataatatatgcaaggtttgaggttcaaacc 3299095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 4485901 - 4485848
Alignment:
Q  162 agttcttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggt 215  Q
    |||||| |||||||||||||| || ||| | |||||||||| ||||||||||||    
T  4485901 agttctcgtgaacttagttcaattgataaggacaatacatagtatatgcaaggt 4485848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 7282551 - 7282596
Alignment:
Q  163 gttcttgtgaacttagttcagttaatatgaacaatacataatatat 208  Q
    |||||||||||||||| ||||||  |||||||||| ||||||||||    
T  7282551 gttcttgtgaacttagctcagttggtatgaacaatgcataatatat 7282596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 25198315 - 25198262
Alignment:
Q  176 tagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    ||||||||||| || ||||||||||||||||||| |||||  |||||| |||||    
T  25198315 tagttcagttagtaggaacaatacataatatatgtaaggtcggaggttcaaacc 25198262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 16067984 - 16067936
Alignment:
Q  167 ttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggt 215  Q
    ||||||||||| |||  || ||||||||||||||||| |||||||||||    
T  16067984 ttgtgaacttaattctattgatatgaacaatacataaaatatgcaaggt 16067936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 26033282 - 26033338
Alignment:
Q  176 tagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacctca 232  Q
    |||||||||| ||||| ||||| ||||||||||||||| ||   |||||||||||||    
T  26033282 tagttcagttgatatggacaatgcataatatatgcaagcttcagggtttaaacctca 26033338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 36253367 - 36253419
Alignment:
Q  163 gttcttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggt 215  Q
    |||||| |||||||||||||||| | ||||||||| ||||| ||||| |||||    
T  36253367 gttcttctgaacttagttcagttgacatgaacaatgcataaaatatgtaaggt 36253419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 42756168 - 42756120
Alignment:
Q  168 tgtgaacttagttcagttaatatgaacaatacataatatatgcaaggtt 216  Q
    ||||||||||| |||||| ||| | ||||| ||||||||||||||||||    
T  42756168 tgtgaacttagctcagttgataaggacaatgcataatatatgcaaggtt 42756120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 15690987 - 15690937
Alignment:
Q  166 cttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggtt 216  Q
    ||||||| ||||||||||||| |||||||||||||||||| ||||||||||    
T  15690987 cttgtgagcttagttcagttactatgaacaatacataataaatgcaaggtt 15690937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 36692231 - 36692173
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaa 227  Q
    |||| ||||||| | ||| |||| |||||||||||||||||||||||||||||||||||    
T  36692231 gtgaccttagtttaattagtatggacaatacataatatatgcaaggtttgaggtttaaa 36692173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 5117201 - 5117262
Alignment:
Q  162 agttcttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtt 223  Q
    |||||| |||| ||||| |||||| ||| | ||||||||||||||||| |||||||||||||    
T  5117201 agttctcgtgagcttagctcagttgataaggacaatacataatatatgtaaggtttgaggtt 5117262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 1744051 - 1744004
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtt 216  Q
    ||||||||| |||||||  |||| ||||||||||||||||||||||||    
T  1744051 gtgaacttaattcagttggtatggacaatacataatatatgcaaggtt 1744004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 14218042 - 14217980
Alignment:
Q  166 cttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaac 228  Q
    ||||| ||||||  ||||||| ||||||||| |||||||||||| || |||||||||| ||||    
T  14218042 cttgtaaacttaactcagttagtatgaacaaaacataatatatgtaaagtttgaggttcaaac 14217980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 25441563 - 25441501
Alignment:
Q  167 ttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    |||||||||||| ||||||  |||| ||||| ||||||||||||||||| || |||| |||||    
T  25441563 ttgtgaacttagctcagttggtatggacaatgcataatatatgcaaggtctggggttcaaacc 25441501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 46093134 - 46093176
Alignment:
Q  187 atatgaacaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    |||| |||||| |||||||||||||||||||| ||||||||||    
T  46093134 atataaacaatgcataatatatgcaaggtttgtggtttaaacc 46093176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 2753758 - 2753705
Alignment:
Q  176 tagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    ||||||||||| |||| ||||| ||||||||||||||| |||| |||| |||||    
T  2753758 tagttcagttagtatggacaatgcataatatatgcaagatttggggttcaaacc 2753705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 33404233 - 33404282
Alignment:
Q  174 cttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtt 223  Q
    ||||| |||||| ||||| ||||||||||||||||| || ||||||||||    
T  33404233 cttagctcagttgatatggacaatacataatatatgtaaagtttgaggtt 33404282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 53162198 - 53162259
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacct 230  Q
    |||| ||||| ||| || ||||| ||||| ||||| ||||||||||||||||||| ||||||    
T  53162198 gtgagcttagctcaattgatatggacaatgcataaaatatgcaaggtttgaggttcaaacct 53162259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 20400101 - 20400137
Alignment:
Q  193 acaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  20400101 acaatacataatatatgcaaggtctgaggttcaaacc 20400137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 22722402 - 22722462
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    |||| ||||| ||||||| |||||||||| ||||| |||||||||||  |||||| |||||    
T  22722402 gtgagcttagctcagttagtatgaacaatgcataaaatatgcaaggtccgaggttcaaacc 22722462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 41030188 - 41030224
Alignment:
Q  192 aacaatacataatatatgcaaggtttgaggtttaaac 228  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  41030188 aacaatacataaaatatgcaaggtttgaggttcaaac 41030224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 43345062 - 43345022
Alignment:
Q  175 ttagttcagttaatatgaacaatacataatatatgcaaggt 215  Q
    |||| ||||||  ||||||||||||||||||||||||||||    
T  43345062 ttagctcagttggtatgaacaatacataatatatgcaaggt 43345022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 55126030 - 55126066
Alignment:
Q  193 acaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    |||||||||||||||||||||||| |||||| |||||    
T  55126030 acaatacataatatatgcaaggttcgaggttcaaacc 55126066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 47070854 - 47070910
Alignment:
Q  175 ttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacctc 231  Q
    ||||||||||| ||| |||||||||||||||||||||||||| |  |||||||||||    
T  47070854 ttagttcagttgataggaacaatacataatatatgcaaggttcggagtttaaacctc 47070910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 12213990 - 12214039
Alignment:
Q  166 cttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggt 215  Q
    ||||||| ||||| |||||| ||| |||||||||||||||||||||||||    
T  12213990 cttgtgagcttagctcagttgataggaacaatacataatatatgcaaggt 12214039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 28832238 - 28832178
Alignment:
Q  163 gttcttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtt 223  Q
    |||||||||| ||||  ||||||  |||||||||| ||||||||||||||||| |||||||    
T  28832238 gttcttgtgagcttaactcagttggtatgaacaatgcataatatatgcaaggtctgaggtt 28832178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 45190330 - 45190283
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtt 216  Q
    |||||||||||||||||  |||| ||||| ||||||||||||||||||    
T  45190330 gtgaacttagttcagttggtatggacaatgcataatatatgcaaggtt 45190283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 231
Target Start/End: Complemental strand, 434373 - 434335
Alignment:
Q  193 acaatacataatatatgcaaggtttgaggtttaaacctc 231  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  434373 acaatacataatatatgtaaggtttggggtttaaacctc 434335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 1834512 - 1834466
Alignment:
Q  163 gttcttgtgaacttagttcagttaatatgaacaatacataatatatg 209  Q
    ||||| |||||||||  |||||||||||| |||||||||||||||||    
T  1834512 gttctcgtgaacttaactcagttaatatggacaatacataatatatg 1834466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 41974767 - 41974821
Alignment:
Q  175 ttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    ||||||||||| ||| | | ||| ||||||||||||||||||||||||| |||||    
T  41974767 ttagttcagttgatagggataatgcataatatatgcaaggtttgaggttcaaacc 41974821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 3157778 - 3157713
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacctcaac 234  Q
    |||| ||||| ||| ||| | |||||||| |||||||||| |||||||||||||| ||||| ||||    
T  3157778 gtgagcttagctcaattagtttgaacaatgcataatatatacaaggtttgaggttcaaaccccaac 3157713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 3393623 - 3393582
Alignment:
Q  175 ttagttcagttaatatgaacaatacataatatatgcaaggtt 216  Q
    |||| |||||| ||||||||||| ||||||||||||||||||    
T  3393623 ttagctcagttgatatgaacaatgcataatatatgcaaggtt 3393582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 3510009 - 3509956
Alignment:
Q  162 agttcttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggt 215  Q
    |||||| |||||||||| ||||||  |||| ||||| |||||||||||||||||    
T  3510009 agttctcgtgaacttagctcagttggtatggacaatgcataatatatgcaaggt 3509956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 15382887 - 15382834
Alignment:
Q  162 agttcttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggt 215  Q
    ||||||||||| ||||  |||||| |||||||||||  ||||||||||||||||    
T  15382887 agttcttgtgagcttaactcagttgatatgaacaatgtataatatatgcaaggt 15382834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 32209902 - 32209845
Alignment:
Q  166 cttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtt 223  Q
    ||||||| ||||  |||||| ||| |||||||||||||||||||||| ||| ||||||    
T  32209902 cttgtgagcttacctcagttgataggaacaatacataatatatgcaacgttcgaggtt 32209845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 8148426 - 8148378
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggttt 217  Q
    |||| ||||| ||||||  || |||||||||||||||||||||||||||    
T  8148426 gtgagcttagctcagttggtaagaacaatacataatatatgcaaggttt 8148378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 27449506 - 27449462
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaag 213  Q
    |||| ||||| |||||||||||| ||||| |||||||||||||||    
T  27449506 gtgagcttagctcagttaatatggacaatgcataatatatgcaag 27449462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 28460254 - 28460310
Alignment:
Q  174 cttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacct 230  Q
    ||||||||||||  ||||||||||  |||| ||||| ||||||||||||| ||||||    
T  28460254 cttagttcagttcgtatgaacaatgtataaaatatggaaggtttgaggttcaaacct 28460310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 32075306 - 32075258
Alignment:
Q  168 tgtgaacttagttcagttaatatgaacaatacataatatatgcaaggtt 216  Q
    ||||||||||| |||||| ||| | |||||||||| |||||||||||||    
T  32075306 tgtgaacttagctcagttgataaggacaatacatagtatatgcaaggtt 32075258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 48100719 - 48100783
Alignment:
Q  166 cttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacct 230  Q
    ||||||| ||||| ||||||  |||| ||||| ||||| |||||||||||||| |||| ||||||    
T  48100719 cttgtgagcttagctcagttggtatggacaatgcataaaatatgcaaggtttggggttcaaacct 48100783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 1535308 - 1535363
Alignment:
Q  174 cttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    |||||||||||| ||| ||||||| |||||||||||||||| |||| |||||||||    
T  1535308 cttagttcagttgataggaacaatgcataatatatgcaaggattgaagtttaaacc 1535363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 34701147 - 34701206
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaac 228  Q
    |||||||||||||||||  || ||||||| ||||||||||||||||| ||||||| ||||    
T  34701147 gtgaacttagttcagttggtaggaacaatgcataatatatgcaaggtctgaggttcaaac 34701206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 12700485 - 12700436
Alignment:
Q  166 cttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggt 215  Q
    ||||||| ||||||||||||  |||||||||| |||||||||||||||||    
T  12700485 cttgtgagcttagttcagttggtatgaacaatgcataatatatgcaaggt 12700436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 17330015 - 17329978
Alignment:
Q  193 acaatacataatatatgcaaggtttgaggtttaaacct 230  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  17330015 acaatacataatatatgcaaggtctgaggtttaaacct 17329978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 28046239 - 28046179
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    |||| |||||||||||| |||   ||||| |||||||||||||||||||||||||| ||||    
T  28046239 gtgagcttagttcagttgataaagacaatgcataatatatgcaaggtttgaggtttgaacc 28046179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 3487931 - 3487978
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtt 216  Q
    ||||||||||||||||| ||| ||| ||| ||||||||||||||||||    
T  3487931 gtgaacttagttcagttgataagaataatgcataatatatgcaaggtt 3487978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 2473609 - 2473663
Alignment:
Q  175 ttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    |||| ||||||| || | ||||||||||||||||||||||| || ||||||||||    
T  2473609 ttagctcagttagtagggacaatacataatatatgcaaggtatggggtttaaacc 2473663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 231
Target Start/End: Complemental strand, 2617242 - 2617204
Alignment:
Q  193 acaatacataatatatgcaaggtttgaggtttaaacctc 231  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  2617242 acaatgcataatatatgtaaggtttgaggtttaaacctc 2617204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 9111047 - 9111093
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggt 215  Q
    |||| ||||||||||||  |||||||||| |||||||||||||||||    
T  9111047 gtgagcttagttcagttggtatgaacaatgcataatatatgcaaggt 9111093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 12318767 - 12318813
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggt 215  Q
    |||| ||||||||||||  ||||||||||||||||| ||||||||||    
T  12318767 gtgagcttagttcagttgctatgaacaatacataatgtatgcaaggt 12318813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 8138519 - 8138454
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacctcaac 234  Q
    ||||| |||| |||||| ||| ||||||| ||||||||||| ||||| || |||| ||||||||||    
T  8138519 gtgaatttagctcagttgataagaacaatgcataatatatgtaaggtctggggttcaaacctcaac 8138454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 21598976 - 21599017
Alignment:
Q  188 tatgaacaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    ||||||||||||||||||||||||||||  | ||||||||||    
T  21598976 tatgaacaatacataatatatgcaaggtacggggtttaaacc 21599017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 29335625 - 29335576
Alignment:
Q  180 tcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    ||||||| ||| |||||| ||||||||||||||||| ||| |||||||||    
T  29335625 tcagttagtataaacaatgcataatatatgcaaggtctgatgtttaaacc 29335576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 34474224 - 34474273
Alignment:
Q  166 cttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggt 215  Q
    ||||||||| |||||||| | || |||||||| |||||||||||||||||    
T  34474224 cttgtgaacatagttcagctgatttgaacaatgcataatatatgcaaggt 34474273  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 9392729 - 9392669
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    |||| ||||| ||||||  |||||| ||| |||||||||||||||||  ||||||||||||    
T  9392729 gtgagcttagctcagttgttatgaaaaatgcataatatatgcaaggtccgaggtttaaacc 9392669  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 12904367 - 12904331
Alignment:
Q  180 tcagttaatatgaacaatacataatatatgcaaggtt 216  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  12904367 tcagttgatatgaacaatgcataatatatgcaaggtt 12904331  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 33938745 - 33938693
Alignment:
Q  164 ttcttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggtt 216  Q
    |||| |||| ||||| ||||||  |||||||||| ||||||||||||||||||    
T  33938745 ttctcgtgagcttagctcagttggtatgaacaatgcataatatatgcaaggtt 33938693  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 30488925 - 30488984
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaac 228  Q
    |||| |||||||||||| ||||||||||| |||||||||| ||||||||| |||| ||||    
T  30488925 gtgagcttagttcagttgatatgaacaatgcataatatatacaaggtttggggttcaaac 30488984  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 3764592 - 3764552
Alignment:
Q  175 ttagttcagttaatatgaacaatacataatatatgcaaggt 215  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  3764592 ttagttcagttgatatgaacaatacatgatatatgcaaggt 3764552  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 21657456 - 21657396
Alignment:
Q  172 aacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacctca 232  Q
    ||||||||||||||  || | ||||| ||||||||||| ||||||||||||| ||||||||    
T  21657456 aacttagttcagtttgtagggacaatgcataatatatgtaaggtttgaggttcaaacctca 21657396  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 11156837 - 11156896
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaac 228  Q
    |||| ||||||||||||  |||| | |||||||||||||| |||||||||||||| ||||    
T  11156837 gtgagcttagttcagttgttatggataatacataatatatacaaggtttgaggttcaaac 11156896  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 31602888 - 31602826
Alignment:
Q  167 ttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    |||||| ||||| ||||||  |||||||||| |||||||||||||||||| ||| || |||||    
T  31602888 ttgtgaccttagctcagttggtatgaacaatgcataatatatgcaaggttcgagattcaaacc 31602826  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 17985234 - 17985287
Alignment:
Q  174 cttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaa 227  Q
    ||||| ||||||| ||  |||||||||||||||||||||||| ||| |||||||    
T  17985234 cttagctcagttagtaaaaacaatacataatatatgcaaggtctgaagtttaaa 17985287  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 22297385 - 22297442
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaa 226  Q
    |||| ||||| ||||||  || ||||||||||||||||||||||||| || |||||||    
T  22297385 gtgaccttagctcagttggtaagaacaatacataatatatgcaaggtctggggtttaa 22297442  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 27903119 - 27903160
Alignment:
Q  175 ttagttcagttaatatgaacaatacataatatatgcaaggtt 216  Q
    |||||||||||  |||||||||| ||||||||||||||||||    
T  27903119 ttagttcagttggtatgaacaatgcataatatatgcaaggtt 27903160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 2705571 - 2705523
Alignment:
Q  175 ttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtt 223  Q
    |||| |||||| ||| ||||||||||||||||||| ||||| |||||||    
T  2705571 ttagctcagttgataagaacaatacataatatatgtaaggtctgaggtt 2705523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 23036749 - 23036705
Alignment:
Q  188 tatgaacaatacataatatatgcaaggtttgaggtttaaacctca 232  Q
    |||| |||| ||||||||||||||||||| |||||| ||||||||    
T  23036749 tatggacaaaacataatatatgcaaggttagaggttcaaacctca 23036705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 32675360 - 32675308
Alignment:
Q  163 gttcttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggt 215  Q
    |||||||||| ||||||||||||   | ||||||| |||||||||||||||||    
T  32675360 gttcttgtgagcttagttcagttggcaagaacaatgcataatatatgcaaggt 32675308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 39610408 - 39610340
Alignment:
Q  163 gttcttgtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacctc 231  Q
    ||||| |||| ||||| |||||| ||||| ||||| |||||||||||||| |||||  ||| |||||||    
T  39610408 gttctcgtgagcttagctcagttgatatggacaatgcataatatatgcaatgtttggagttcaaacctc 39610340  T

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Target: scaffold0118 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 39998 - 40060
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacctc 231  Q
    |||| ||||| ||||||  |||| ||||| |||||||||||||||||| |||||| |||||||    
T  39998 gtgagcttagctcagttggtatggacaatgcataatatatgcaaggttagaggttcaaacctc 40060  T

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Target: scaffold0320 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 15522 - 15473
Alignment:
Q  163 gttcttgtgaacttagttcagttaatatgaacaatacataatatatgcaa 212  Q
    ||||||||||  ||||||||||||||| | ||||| ||||||||||||||    
T  15522 gttcttgtgagtttagttcagttaataaggacaatgcataatatatgcaa 15473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 14205 - 14254
Alignment:
Q  174 cttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtt 223  Q
    |||| ||||||| |||  |||||||||||||||||| |||||||||||||    
T  14205 cttaattcagttgatagtaacaatacataatatatgtaaggtttgaggtt 14254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 22911 - 22971
Alignment:
Q  169 gtgaacttagttcagttaatatgaacaatacataatatatgcaaggtttgaggtttaaacc 229  Q
    |||| ||||||| |||| ||||||||||| ||||| |||||||||||  |||||| |||||    
T  22911 gtgagcttagtttagttgatatgaacaatgcataaaatatgcaaggtccgaggttcaaacc 22971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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