View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_high_16 (Length: 446)
Name: NF2753_high_16
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 105 - 426
Target Start/End: Original strand, 42558141 - 42558473
Alignment:
| Q |
105 |
ttttagattccttacaaaaatcattcaaaagtttttaatgca---tttatgcctgtacgcaaagttctgcttgctgttactataaatagtacactaccag |
201 |
Q |
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| T |
42558141 |
ttttagattccttaaaaaaatcattcaaaagtttttaatgcaacatttatgcctgtacgcaaagttctgcttgctgttactataaatagtacactaccag |
42558240 |
T |
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| Q |
202 |
ctgcagtgtcagtttttcttttcacgaataaggaatgaatgttgattggtca--------taagtactttacttctgtttccatatccatattaatggtt |
293 |
Q |
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| T |
42558241 |
ctgcagtgtcagtttttctttttacgaataaggaatgaatgttgattggtcagttgtatataagtactgaacttctgtttccatatccatattaatggtt |
42558340 |
T |
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| Q |
294 |
ctagaacaagaattattactctaattaccataaatcaattttctgtcctcataaacaaaaagtttagtacaaaatttagtaaatgcaagtgataaacata |
393 |
Q |
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| T |
42558341 |
ctagatcaagaattattactctaattaccataaatcaattttctgtcctcataaacaaaaagtttagtacaaaatttagtaaatgcaagtgataaacata |
42558440 |
T |
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| Q |
394 |
ccaaaattgtgatttgagagaggtggctcaaga |
426 |
Q |
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| T |
42558441 |
ccaaaattgtgatttgagagaggtgggtcaaga |
42558473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 42558036 - 42558114
Alignment:
| Q |
1 |
gccaattgagttaatttttacgaacttacgtacnnnnnnnnaatgtgtaaattatgtatacttaaatgaattttgaaag |
79 |
Q |
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| T |
42558036 |
gccaattgagttaatttttacgaacttacatacttttttttaatacgtaaattatgtatactttaatgaattttgaaag |
42558114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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