View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_high_22 (Length: 400)
Name: NF2753_high_22
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 4286397 - 4286173
Alignment:
| Q |
1 |
tagaacatggtactgttatgcccagtgaaaattgaacagacctctacttttatgtgannnnnnnn-gctaaggttatgccatgatgggccaagggaatga |
99 |
Q |
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| T |
4286397 |
tagaacatggtactgttatgcccggtgaaaattgaacagacctctacgtttatgtgattcttttttgctaaggttatgccatgatgggccaagggaatga |
4286298 |
T |
|
| Q |
100 |
taacagagtcttgtcttaaatgaagagttagcttacttaattatcctcaagttcaatatacccagattgatttttatcaaaaaacttgaatgctctatgg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4286297 |
taacagagtcttgtcttaaatgaagagttagcttacttaattatcctcaagttcaatataccgagattgatttttatcaaaaaacttgaatgctctatgg |
4286198 |
T |
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| Q |
200 |
aggtgtatattattctcagacgaat |
224 |
Q |
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|||||||||| ||||||||| |||| |
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| T |
4286197 |
aggtgtatatcattctcagatgaat |
4286173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 236 - 349
Target Start/End: Complemental strand, 4284670 - 4284562
Alignment:
| Q |
236 |
tttcaacaataagaaggtgtattagcnnnnnnncaaaacaaagagtgtactaatagcactactcccaataacaagtttctttacaatttcgcgggcacag |
335 |
Q |
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| T |
4284670 |
tttcaacaataagaaggtgtattagcaaa-----aaaaaaaagagtgtactaatagcactactccaaataacaagtttcttcacaatttcgcgggcacag |
4284576 |
T |
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| Q |
336 |
tttcgcagttcaca |
349 |
Q |
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| T |
4284575 |
tttcgcagttcaca |
4284562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 21387149 - 21387211
Alignment:
| Q |
143 |
tcctcaagttcaatatacccagattgatttttatcaaaaaacttgaatgctctatggaggtgt |
205 |
Q |
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||||||||||||||| ||||||||| |||||||||||||| | ||||||||| ||||||||| |
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| T |
21387149 |
tcctcaagttcaataaacccagattcgtttttatcaaaaaattggaatgctctttggaggtgt |
21387211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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