View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_high_24 (Length: 392)
Name: NF2753_high_24
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 11 - 378
Target Start/End: Original strand, 25380588 - 25380955
Alignment:
| Q |
11 |
cataggctctgaaggagtttggcctagattttacaatgattcaacaaatttttgctagtaaaacaagacatcaaattaagctgaagttcaagaatgaaga |
110 |
Q |
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| T |
25380588 |
cataggctctgaaggagtttggcctagattttacaatgattcaacaaatttttgctagtaaaacaagacgtcaaattaagctgaagttcaagaatgaaga |
25380687 |
T |
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| Q |
111 |
ccaacatcatcctttacgaataactgatgctattaatagtcgttcatcaggttaaactcttcagttacttgtctgtgctcttcatggtcatatagaacat |
210 |
Q |
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| T |
25380688 |
ccaacatcatcctttacgaataactgatgctattaacagtcattcatcaggttaaactcttcagttacttgtctgtgctcttcatggtcatatagtacat |
25380787 |
T |
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| Q |
211 |
gatcagaagggtttattgttctttatctactccttgatgtggaataacattttactgaatgaaatctataatcttctctctttagatcatcatattttta |
310 |
Q |
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| T |
25380788 |
gatcagaagggtttattgttctttatctactccttgatgtggaataacattttactgaatgaaatctataatcttctctctttagatcatcatattttta |
25380887 |
T |
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| Q |
311 |
agtcggtgattgcgaaactgccacaaatttctaccattaatgcaaatcaggaagccactgaagacact |
378 |
Q |
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| T |
25380888 |
agtcggtgattgcgaaactgccacaaatttctaccactaatgcaaatcaggaagccactgaagacact |
25380955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 38332095 - 38331968
Alignment:
| Q |
26 |
agtttggcctagattttacaatgattcaacaaatttttgctagtaaaacaagacatcaaattaagctgaagttcaagaatgaagaccaacatcatccttt |
125 |
Q |
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|||||||| ||||||||| ||||| ||||| |||| || ||||||| | |||||||||||| |||||| |||||| ||||| | ||| |||||||| |
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| T |
38332095 |
agtttggcacagattttactatgatacaacagcttttccctgataaaacacgtcatcaaattaagttgaagtacaagaaggaagagcgacaacatccttt |
38331996 |
T |
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| Q |
126 |
acgaataactgatgctattaatagtcgt |
153 |
Q |
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|| |||||||||| || |||| |||| |
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| T |
38331995 |
actgttaactgatgccatgaataatcgt |
38331968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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