View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_high_26 (Length: 388)
Name: NF2753_high_26
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_high_26 |
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| [»] scaffold0854 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 27780259 - 27780642
Alignment:
| Q |
1 |
ttatacttctcttcatttcttctctgaactataaactatcaacatattattatctctcaacttgaaatacatatttggccaataccaagatgttaaactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27780259 |
ttatacttctcttcatttcttctctgaactataaactatcaacatatcattatctctcaacttgaaatacatatttggccaataccaagatgttgaactt |
27780358 |
T |
|
| Q |
101 |
ggttcattaaaagaaaatcatctcatagaatttccaaatttcatcagtatgaaaagtaaagatgtacagatatcattgttcttttttcctaaatgtcatt |
200 |
Q |
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| T |
27780359 |
ggttcattaaaagaaaatcatctcatagaatttccaaatttcatcagtatgaaaagtaaagatgtacagatatcattgttcttttttcctaaatgtcatt |
27780458 |
T |
|
| Q |
201 |
gtatcttgcctttgcccgtgaaaggatcatcttgtaatgatggttccaaggaacaatacaattggacgctgtcgaatatgattgtttcacttggactata |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
27780459 |
gtatcttgcctttgcccgtgaaaggatcatcttgcaatgatggttccaaggaacaatacaattggacgctgtcgaatatgattgtttcgcttggactgta |
27780558 |
T |
|
| Q |
301 |
tatgttgttatagtaacaaattgatttatggtgcctattcaatattcatgcaataagttttctacaaacagtgcaatgttacag |
384 |
Q |
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| T |
27780559 |
tatgttgttatagtaacaaattgatttatggtgcctattcaatattcatgcaataagttttctacaaacaatgcaatgttacag |
27780642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 27773888 - 27773934
Alignment:
| Q |
59 |
aacttgaaatacatatttggccaataccaagatgttaaacttggttc |
105 |
Q |
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| T |
27773888 |
aacttgaaatacatatttggtcaataccaagatgttcaacttggttc |
27773934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 27344331 - 27344383
Alignment:
| Q |
63 |
tgaaatacatatttggccaataccaagatgttaaacttggttcattaaaagaa |
115 |
Q |
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|||| ||||||||||||||| |||||||||||||||| | |||| |||||||| |
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| T |
27344331 |
tgaagtacatatttggccaacaccaagatgttaaactcgcttcactaaaagaa |
27344383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 27370803 - 27370852
Alignment:
| Q |
66 |
aatacatatttggccaataccaagatgttaaacttggttcattaaaagaa |
115 |
Q |
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| T |
27370803 |
aatacatatttggccaacaccaagatgttcaactcgcttcactaaaagaa |
27370852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 18723080 - 18723044
Alignment:
| Q |
63 |
tgaaatacatatttggccaataccaagatgttaaact |
99 |
Q |
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| T |
18723080 |
tgaaatacatatttggccaacaccaagatgttcaact |
18723044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 26211884 - 26211848
Alignment:
| Q |
63 |
tgaaatacatatttggccaataccaagatgttaaact |
99 |
Q |
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| T |
26211884 |
tgaaatacatatttggccaacaccaagatgtcaaact |
26211848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 26239091 - 26239055
Alignment:
| Q |
63 |
tgaaatacatatttggccaataccaagatgttaaact |
99 |
Q |
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| T |
26239091 |
tgaaatacatatttggccaacaccaagatgtcaaact |
26239055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 3979 - 3927
Alignment:
| Q |
63 |
tgaaatacatatttggccaataccaagatgttaaacttggttcattaaaagaa |
115 |
Q |
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|||||||||||||||||||| |||||||||||||||| | |||| |||||||| |
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| T |
3979 |
tgaaatacatatttggccaacaccaagatgttaaactcgcttcactaaaagaa |
3927 |
T |
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