View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_high_27 (Length: 385)
Name: NF2753_high_27
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 5 - 370
Target Start/End: Original strand, 42558629 - 42559019
Alignment:
| Q |
5 |
catacaaatatcaaattaattggtaaaagagagag--------ggaaaaatataagctcctatgtttgataccactttggttaacaagaatcgctataat |
96 |
Q |
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| T |
42558629 |
catacaaatatcaaattaattggtaaaagagagagagagggggggaaaaatataagctcatatgtttgatatcactttggttaacaagaatcgctataat |
42558728 |
T |
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| Q |
97 |
-----------------atgcggttttgaaaaaatcatggtgattagcggtaccaaacataaaatagattagggcttacatctaaaaccctctgggtgtc |
179 |
Q |
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||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42558729 |
tttgaagaagctacaatatgaggttttgaaaaaatcatggtgattcgcggtaccaaacataaaatagattagggcttacatctaaaaccctcttggtgtc |
42558828 |
T |
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| Q |
180 |
agtttgattgagttgcattctaaccacttgtgaaaacctagcattttttgtatcattaaatttcaaattagtaaacctaaaagaattaacagagtaacta |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42558829 |
agtttgattgagttgcattctaaccacttgtgaaaacctagcattttttgtatcattaaatttcaaattagtaaacctaaaagaattaacagagtaacta |
42558928 |
T |
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| Q |
280 |
agcacgtctaaaccacgcgcccaaatatgtttcttccctttacgaccaggaacaagatcctcaatcgccaaaggaacaacatcctcaacaa |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42558929 |
agcacgtctaaaccacgcgcccaaatatgtttcttccctttacgaccaggaacaagatcctcaatcgccaaaggaacaacatcctcaacaa |
42559019 |
T |
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