View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_high_3 (Length: 763)
Name: NF2753_high_3
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 204 - 746
Target Start/End: Original strand, 19607106 - 19607635
Alignment:
| Q |
204 |
gtgtcgaaccggtgatgtcattgaggaagtcatcagatgaggcggcgcaaccggtggtgtggcatgtgtcttgaccgttggtggagaaggctttagttga |
303 |
Q |
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| T |
19607106 |
gtgtggaaccggtgatgtcattgaggaagtcatcagatgaggcggcgcaaccggtggtgtggcatgtggcttgaccgttggtggagagggctttagttga |
19607205 |
T |
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| Q |
304 |
tggtacggttttttatgaaactcatcatagaaagccggtgagcaagttaatccgtaaatatacttcagttcctcatgatttagattgggctcggaaaggt |
403 |
Q |
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| T |
19607206 |
tggtacggttttttatgaaactcatcataggaagccgatgagcaagttaatccgtaaatatacttcagttcctcatgatttagattgggctcggaaaggt |
19607305 |
T |
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| Q |
404 |
gtgattgtctcagtgttgaatggagaagcaataccgattattcagacttgtaaagaggatgcaggttttgatgacttagatattattccagttggtgctg |
503 |
Q |
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| T |
19607306 |
gtgattgtctcagtgttgaacggagaagcaataccggttattcaaactcgtatagaggatgcgggttttgatgacttagatattattcca-------ctg |
19607398 |
T |
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| Q |
504 |
acaaggtttttcattcatagtttatcaagttcagatgttatggcggtgtttgctgaggcccaagatttctttaatttannnnnnncaaagccaatgcggt |
603 |
Q |
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| T |
19607399 |
acaagg-ttttcattca-----tatcaagttcagatgttatggcggtgtttgctgaggcccaagatttctttaatttatttttttcaaagccagtgcggt |
19607492 |
T |
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| Q |
604 |
aggataaaaatattatgaaggttgaaagaggatcttgggtccgaatttatggaacgcatatccatgcttggagtgaatcatttttcaagctatgtgtttt |
703 |
Q |
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| T |
19607493 |
gggataaaaatattatgaaggttgaaagaggatcttgggtccgaatttatggaacacatatccatgcttggagtgaatcatttttcaagctatgtgtttt |
19607592 |
T |
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| Q |
704 |
ttattgcggtatatttttacgggtggataattgcactctttct |
746 |
Q |
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| T |
19607593 |
tgattgcggtatatttttacgggtggataattgcaccctttct |
19607635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 12 - 136
Target Start/End: Original strand, 19606917 - 19607038
Alignment:
| Q |
12 |
atgaaggaggagatttttaggactggtgagggagaaaagattgccgagagaatgggagaagaaggtgagggagaaaaaagagtgagtgggggaaacaagg |
111 |
Q |
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| T |
19606917 |
atgaaggaagatatttttaggactggtgagggagaaaagattcccgagagaatgggagaa---ggtgagggagaaaaaagagtgagtgggggaaacaagg |
19607013 |
T |
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| Q |
112 |
gagcaggagggggcaggtctttgta |
136 |
Q |
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| T |
19607014 |
gagcaggagggggcaggtctctgta |
19607038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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