View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2753_high_30 (Length: 369)
Name: NF2753_high_30
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_high_30 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 12 - 369
Target Start/End: Original strand, 28690508 - 28690860
Alignment:
| Q |
12 |
aatatacaattaggaatatgaattgataaataggtctaagtgtgacataaatgtgcattatagtaaatatgtattaatgtttcaggccctggctggtctt |
111 |
Q |
| |
|
||||||||||||| |||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
28690508 |
aatatacaattagcaatacgaattgataactaggtctgagtgtgacataaatgtgcattatagtaaatatgtattaatgtttcaggccctggttgttctt |
28690607 |
T |
|
| Q |
112 |
caattggctatggagaagcagaggaacttggaccctttttcccccaaaatagcagccaacctaagctcaagttgaacccatattcttggaataaaggtgg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28690608 |
caattggctatggagaagcagaggaacttggaccctttttcccccaaaatagcagccaacctaagctcaagttgaacccatattcttggaataaaggtgg |
28690707 |
T |
|
| Q |
212 |
gtcaatttc---aaattgataactttcacaatgcattgcaataatggtagttcaattcattgtaaatttgttaatttgagataaactttgtatatcctgt |
308 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
28690708 |
gtcaatttcaataaattgataactttcacaatgcattgcaaaaatggtagttcaattcattgta--------aatttgagataaactttgtatatcttgt |
28690799 |
T |
|
| Q |
309 |
acaattttaaaaataaactaaatcttttctacagctgcaaatcttttgtttcttgaatccc |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28690800 |
acaattttaaaaataaactaaatcttttctacagctgcaaatcttttgtttcttgaatccc |
28690860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University