View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_high_32 (Length: 365)
Name: NF2753_high_32
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_high_32 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 62 - 204
Target Start/End: Complemental strand, 8271826 - 8271684
Alignment:
| Q |
62 |
acaatggttcctctaccatatttaagccaagaagctgattaagatgagtaagaagcagaatttcttgaggcaaacagtcaaggatttgatgaataaaaaa |
161 |
Q |
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| T |
8271826 |
acaatggttcctctaccatatttaagccaagaagctgattaagatgagtaagaagcagaatttcttgaggcaaacagtcaaggatttgatgaatcaaaaa |
8271727 |
T |
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| Q |
162 |
ttattcatgagacaaacatgttcttcaaagtgtaaatgattat |
204 |
Q |
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| T |
8271726 |
ttattcatgagacaaacatgttcttcaaagtgtaaatgattat |
8271684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 202 - 277
Target Start/End: Complemental strand, 8270869 - 8270794
Alignment:
| Q |
202 |
tataacaatctcaaacatgttcttcaaaaaggcatttgtaacataaacatgtagtggtttcaacactcgttctaag |
277 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
8270869 |
tataacaatcgcaaacatgttcttcaaaaaggcatttgtaacataaacatgtagttgtttcaacactcgttataag |
8270794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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