View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_high_54 (Length: 239)
Name: NF2753_high_54
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_high_54 |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 13412585 - 13412479
Alignment:
| Q |
14 |
aatataacaaactaaaacataatatttcatcttacatcatgtctatagctataccatttatatctatagctatacatgctaagaaaactatgtagtttca |
113 |
Q |
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| T |
13412585 |
aatataacaaactaaaacataatatttcatcttacatcatgtctatagctataccatttatatctatagctatacatgctaagaaaactatgtagtctca |
13412486 |
T |
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| Q |
114 |
aatcagt |
120 |
Q |
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||||||| |
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| T |
13412485 |
aatcagt |
13412479 |
T |
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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 13412421 - 13412379
Alignment:
| Q |
178 |
tttgatgtatatgttcatgggtttggttagaaaatgtaccaac |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13412421 |
tttgatgtatatgttcatgggtttggttagaaaatgtaccaac |
13412379 |
T |
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