View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_high_55 (Length: 239)
Name: NF2753_high_55
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_high_55 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 33802450 - 33802233
Alignment:
| Q |
19 |
ccatgtagcaactaaaacatgggaacaaaacattggtttttatcctatgttgttgttggtcttttcatctccaccctattgatcatgtccaagccgtgtt |
118 |
Q |
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| T |
33802450 |
ccatgtagcaactaaaacatgggaacaaaacattggtttttatcctatgttgttgttggtcttttcatctccaccctattgatcatgtccaaaccgtgtt |
33802351 |
T |
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| Q |
119 |
tatgtgatattcaatatattggcacaatctcacctgggatggaaggttctccaacgagttttattattgacgaaaattcgaagttccttgtctcaaagaa |
218 |
Q |
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| T |
33802350 |
tatgtgatattcaatatattggcacaatctcacctgggatggaagcttctccaatgagtt---ttattgacgaaaagtcgaagttcctcgtctcaaagga |
33802254 |
T |
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| Q |
219 |
tagaaattttgcttttggttt |
239 |
Q |
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| T |
33802253 |
tagaaattttgtttttggttt |
33802233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 33806932 - 33806715
Alignment:
| Q |
19 |
ccatgtagcaactaaaacatgggaacaaaacattggtttttatcctatgttgttgttggtcttttcatctccaccctattgatcatgtccaagccgtgtt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33806932 |
ccatgtagcaactaaaacatgggaacaaaacattggtttttatcctatgttgttgttggtcttttcatctccaccctattgatcatgtccaaaccgtgtt |
33806833 |
T |
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| Q |
119 |
tatgtgatattcaatatattggcacaatctcacctgggatggaaggttctccaacgagttttattattgacgaaaattcgaagttccttgtctcaaagaa |
218 |
Q |
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| T |
33806832 |
tatgtgatattcaatatattggcacaatctcacctgggatggaagcttctccaatgagtt---ttattgacgaaaagtcgaagttcctcgtctcaaagga |
33806736 |
T |
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| Q |
219 |
tagaaattttgcttttggttt |
239 |
Q |
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| T |
33806735 |
tagaaattttgtttttggttt |
33806715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 52 - 239
Target Start/End: Original strand, 33811405 - 33811589
Alignment:
| Q |
52 |
tggtttttatcctatgttgttgttggtcttttcatctccaccctattgatcatgtccaagccgtgtttatgtgatattcaatatattggcacaatctcac |
151 |
Q |
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| T |
33811405 |
tggtttttatcctatgttgttgttggtctttccatctccaccctactgatcatgtccaaactgtgtttatgtgatattcaatatattggcacaatctcac |
33811504 |
T |
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| Q |
152 |
ctgggatggaaggttctccaacgagttttattattgacgaaaattcgaagttccttgtctcaaagaatagaaattttgcttttggttt |
239 |
Q |
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| T |
33811505 |
ctgggatggagggttctcaagcgaatt---ttattgacgaaggctcgaagttccttgtctcaaagaatagaaattttgcttttggttt |
33811589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 169
Target Start/End: Original strand, 31027050 - 31027196
Alignment:
| Q |
23 |
gtagcaactaaaacatgggaacaaaacattggtttttatcctatgttgttgttggtcttttcatctccaccctattgatcatgtccaagccgtgtttatg |
122 |
Q |
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|||| |||||||||||||||||| ||||||||||||| || |||||||| || ||| | |||||||| ||| ||| |||||||||| | |||||| || |
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| T |
31027050 |
gtaggaactaaaacatgggaacacaacattggtttttttcgaatgttgtttatgttctgtccatctccatcctcttggtcatgtccaaactgtgtttgtg |
31027149 |
T |
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| Q |
123 |
tgatattcaatatattggcacaatctcacctgggatggaaggttctc |
169 |
Q |
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| T |
31027150 |
tgatattcaatatattggcacaatctcaccagggatggaaggttctc |
31027196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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