View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_high_9 (Length: 555)
Name: NF2753_high_9
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 19 - 548
Target Start/End: Complemental strand, 5829334 - 5828805
Alignment:
| Q |
19 |
attctctattctctttaattttctacattgttaacatggtatcaagagcatccttcttaagctactaagtttccgctattgagttcccaaaagtttaaga |
118 |
Q |
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| T |
5829334 |
attctctattctctttaattttctatattgttaacatggtatcaagagcatccttcttaaactactaagtttccgctattgagttcccaaaaatttgaga |
5829235 |
T |
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| Q |
119 |
atatgttttagtagttacggccttttggaattgaattttgaatgtaagagcgtgctggatttttaaaagattagtgtatttaagtttcatgaatggtatg |
218 |
Q |
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| T |
5829234 |
atatgttttagtagttacggcctcttggaattgaattttgaatgtaagagcgtgttggatttttaaaagattagtgtatttaagtttcatgaatggtatg |
5829135 |
T |
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| Q |
219 |
tttttgcggggatggattttgcaactttgttggatcttgttggtggcgtttgtgtaagaatcatatgaagggttttgcttcagggtgtttttccacgaat |
318 |
Q |
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| T |
5829134 |
tttttgcggggatggattttgcaactttgttggatcttgttggtggcgtttgtgtaagaatcatatgaagggttttgcttcagggtgttcttccacgaat |
5829035 |
T |
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| Q |
319 |
ttcatgagtttgcttatgggttgtaaatttagaagatttgtgaagaactctattaaggtgtattttttggataatttggtgagtcaagttattgttgata |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5829034 |
ttcatgagtttgcttatgggttgtaaatttagaagatttgtgaagaactctattaaggtgtattttttggataatttggtgagtcaagttattgttgata |
5828935 |
T |
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| Q |
419 |
atgtgtttgtgaaaagtctttattgacgatgtatttgaattttttggttgctcctctttattagttcctctctctattagacggttggttcttctctttg |
518 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5828934 |
atgtgtttgtgaaaagtctttattgatgatgtatttgaatttttttgttgctcctctttattagttcctctctctattagacagttggttcttctctttg |
5828835 |
T |
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| Q |
519 |
gttattgtgtcttcttttattgttcatctc |
548 |
Q |
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| T |
5828834 |
gttattgtgtcttcttttattgttcttctc |
5828805 |
T |
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