View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_low_1 (Length: 844)
Name: NF2753_low_1
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 692; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 1 - 834
Target Start/End: Complemental strand, 3843384 - 3842547
Alignment:
| Q |
1 |
agcggcggccaaagaaactttggagggacattgcatatatgatggtggctattgtaagcttcatctaacatactctcgtcatactgatctcaatgttaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3843384 |
agcggcggccaaagaaactttggagggacattgcatatatgatggtggctattgtaagcttcatctaacatactctcgtcatactgatctcaatgttaag |
3843285 |
T |
|
| Q |
101 |
gtatnnnnnnnnn-tgtttgagttaatattaatgtgggaagaatatgagaaagttggacattttcttgatcagaaataatgctcgagtgtatgcttctca |
199 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3843284 |
gtataaaaaaaatatgtttgagttaatattaatgagggaagaatatgagaaagttggacattttcttgatcagaaataatgctcgagtgtatgcttctca |
3843185 |
T |
|
| Q |
200 |
acacttgattgaccttttatagtgtttcttttgatcttcgaatgatattcacttaatataattgttttggtttcaggcattcagtgacaaaagcagagac |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3843184 |
acacttgattgaccttttatagtgtttcttttgatcttcgaatgatattcacttaatataattgttt-ggtttcaggcattcagtgacaaaagcagagac |
3843086 |
T |
|
| Q |
300 |
tatacagtgctagatcctagtctccatgcagctcaagctcctgcatggcagaccactcaagctgcgactatgtattctggttcacagggacaaatgccat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3843085 |
tatacagtgctagatcctagtctccatgcagctcaagctcctgcatggcagaccactcaagctgcgactatgtattctggttcaatgggacaaatgccat |
3842986 |
T |
|
| Q |
400 |
catgggatccaaaccagcaggaagtttcacaaagttatttatcagcacctggtacttttccttctggtcaagccgctcctccatttcctggctattcccc |
499 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3842985 |
catgggatccaaaccagcaggaagttacacaaagttatttatcagcacccggtacttttccttctggtcaagccgctcctccatttcctggctattcccc |
3842886 |
T |
|
| Q |
500 |
agctgcagcaccccccgccggtgcctcacctcattctcatatgcctcccagttcatttgctggtgcttttcctggtagtcaacctcattatggttgggaa |
599 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3842885 |
agctgcagtaccccccgccggtgcctcacctcattctcatatgcctcccagttcatttgccggtgcttttcctggtagtcaacctcattatggttgggaa |
3842786 |
T |
|
| Q |
600 |
agtagatttcgtctgaactacaatccctataccttataatttttattcaactccatcaaattttcaagttggatctcattgattcat--agagtttcagt |
697 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3842785 |
agtagatttcgtctgaactacaatccctataccttatagtttttattcaactccatcaaattttcaagttggatctcattgattcatacagagtttcagt |
3842686 |
T |
|
| Q |
698 |
ttcaatttctgatgccctaagttttgtgccttttctccaaattacccactattttcgggtattgtctttacttactacatgga--nnnnnnnnnnctcgt |
795 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
3842685 |
ttcaatttctgatgccctaagttttgagccttttgtccaaactacccactattttcgggtattgtctttacttactacatggattttttttttttcttgt |
3842586 |
T |
|
| Q |
796 |
ttattttcggtatttcttcatgctaacaacccttctgtg |
834 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
3842585 |
ttatttttggtatttcttcatgctaacaacccttctgtg |
3842547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 4e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 2879271 - 2879190
Alignment:
| Q |
23 |
gagggacattgcatatatgatggtggctattgtaagcttcatctaacatactctcgtcatactgatctcaatgttaaggtat |
104 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
2879271 |
gaggggcattgcatatatgatggtggctattgtaagcttcatctatcatactctcgtcatactgatctcaatgtaaaggtat |
2879190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 2879004 - 2878965
Alignment:
| Q |
268 |
ggtttcaggcattcagtgacaaaagcagagactatacagt |
307 |
Q |
| |
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|||||||||| |||||||||||||| |||||||||||||| |
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| T |
2879004 |
ggtttcaggctttcagtgacaaaagtagagactatacagt |
2878965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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