View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_low_13 (Length: 530)
Name: NF2753_low_13
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 35 - 512
Target Start/End: Complemental strand, 52446231 - 52445762
Alignment:
| Q |
35 |
cacagagcaatacaacacaaacacagagtgaatccgaaagaacaaaacaacgtcacatacacatgcactgcgactatgaatcatcaataataaaatgaaa |
134 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52446231 |
cacaaagcaatacaacacaaacacaaagtgaatccgaaagaacgaaacaacgtcacatacacatgcactgcgactatgaatcatcaatgataaaatgaaa |
52446132 |
T |
|
| Q |
135 |
caatctaaaaagaacaaaaccagagacacgtacattgcgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacaccaataa |
234 |
Q |
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| T |
52446131 |
caatctaaaaagaacaaaaccagagacacatacattgtgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacgccaataa |
52446032 |
T |
|
| Q |
235 |
taaaataatgaacatcaacataactatacattatgattgtgaacagagcatcaactcaaccaaagcattatacaacaacacatgaagtcatgaagagtaa |
334 |
Q |
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| T |
52446031 |
taaaataatgaacatcaacacaactatacattatgattgtgaacagagtatcaactcgaccaaagcattatacaacaacacat--------gaagagtaa |
52445940 |
T |
|
| Q |
335 |
atcaaacatcaacatcatcatacgtgtcacggttcaaactcatatcatgaggttcgacctagaaattttgatatttttacatgtttagttaaaacttgta |
434 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52445939 |
atcaaacatcaacatcatcatacgtgtcagggttcaaactcatatcatgaggttcgacctagaaattttgatatttttacatgtttagttaaaactttta |
52445840 |
T |
|
| Q |
435 |
gacaaatgtgttagtactcaatagtttgtaagaagaaattaaacatattgatattcaattaaaggataaggtgtgtat |
512 |
Q |
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| T |
52445839 |
gacaaatgtgttagtactcaatagtttgtaagaagaaattaaacatattgatattcaattaaaggataaggtgtgtat |
52445762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 35 - 482
Target Start/End: Complemental strand, 52447167 - 52446722
Alignment:
| Q |
35 |
cacagagcaatacaacacaaacacagagtgaatccgaaagaacaaaacaacgtcacatacacatgcactgcgactatgaatcatcaataataaaatgaaa |
134 |
Q |
| |
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|||| ||||||||||||||| |||| |||||||| |||||||||||||||||| ||| |||||| || ||||| |||||||||||||||||||||||||| |
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| T |
52447167 |
cacaaagcaatacaacacaagcacaaagtgaatctgaaagaacaaaacaacgtaacaaacacatacattgcgattatgaatcatcaataataaaatgaaa |
52447068 |
T |
|
| Q |
135 |
caatctaaaaagaacaaaaccagagacacgtacattgcgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacaccaataa |
234 |
Q |
| |
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| T |
52447067 |
caatctacaaa---caaaaccacatacacatccattactattgaaattgt-aatcatccctaaattaaaacaataaaaacgtgtaaataaacaccaataa |
52446972 |
T |
|
| Q |
235 |
taaaataatgaacatcaacataactatacattatgattgtgaacagagcatcaactcaaccaaagcattatacaacaacacatgaagtcatgaagagtaa |
334 |
Q |
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| T |
52446971 |
tagaacaatgaacatcaacataaccatacattacgattgtggatagagcatcaactcaattgaagcattatacaacaaca--------cacggagagtaa |
52446880 |
T |
|
| Q |
335 |
atcaaacatcaacatcatcat----------acgtgtcacggttcaaactcatatcatgaggttcgacctagaaattttgatatttttacatgtttagtt |
424 |
Q |
| |
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|||||||||||| |||||| | |||| ||| ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| | |
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| T |
52446879 |
atcaaacatcaatatcatcgtacataagtgaacgtatcaaggttcaaactcatatcatgaggtccgacctagagatttcaatatttttacatgtttacct |
52446780 |
T |
|
| Q |
425 |
aaaacttgtagacaaatgtgttagtactcaatagtttgtaagaagaaattaaacatat |
482 |
Q |
| |
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|||||||||||||| || ||||||| || |||| |||||| ||| ||||||||||||| |
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|
| T |
52446779 |
aaaacttgtagacagatatgttagtgcttaataatttgtatgaataaattaaacatat |
52446722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 399 - 513
Target Start/End: Complemental strand, 52447786 - 52447672
Alignment:
| Q |
399 |
attttgatatttttacatgtttagttaaaacttgtagacaaatgtgttagtactcaatagtttgtaagaagaaattaaacatattgatattcaattaaag |
498 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||| || || |||||||| ||||||||||||||| |||| |||||||||||| |
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| T |
52447786 |
attttgatatttttacatgtttagttcaaacttgtagacaaatgtgctagtgcttaaaagtttgtatgaagaaattaaacatgttgaaattcaattaaag |
52447687 |
T |
|
| Q |
499 |
gataaggtgtgtatt |
513 |
Q |
| |
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|||||| |||||||| |
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|
| T |
52447686 |
gataagatgtgtatt |
52447672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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