View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_low_14 (Length: 491)
Name: NF2753_low_14
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Original strand, 41028504 - 41028972
Alignment:
| Q |
1 |
actcttatcctcatcttctgaacacatactcccaaaaacgaagatata--cacttgttaaatagaggctatagcgcaacagaataacggaatttgaacaa |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41028504 |
actcttatcctcatcttctgaacacatactcccaaaaacgaagatatatacacttgttaaatagaggctatagcgcaacagaataacggaatttgaacaa |
41028603 |
T |
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| Q |
99 |
actgctactgtcccccaatacgctattaactnnnnnnnnnnnnnntattgtggaatagcgactatactgaatttgaacaatatattatttttctacaatc |
198 |
Q |
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| T |
41028604 |
actgctactgtcccccaatacactattaactaaaaaaa-------tattgtggaatagcgactatactgaatttgaacaatccattatttttctacaatc |
41028696 |
T |
|
| Q |
199 |
cacaattgacaacattgtatatacataatgttacttatgcatctattacaatgtttcactatcacactaagcaattattcaaaacaaccagcaacacata |
298 |
Q |
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| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41028697 |
cgcaattgacaacattgtatatacataatgtcacttatgcatctattacaatgtttcactatcacactaagcaattattcaaaacaaccagcaacacata |
41028796 |
T |
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| Q |
299 |
cactgcaattaattctgattctacacaatcaatagttcataaaaattgaaatcaattgaattaagaagaaatgagagattaattacctttgattttgcaa |
398 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41028797 |
cactgcaattaattctgattctacacaatgaatagttcataaaaattgaaatcaattgaattaagaagaaatgagagattaattacctttgattttgcaa |
41028896 |
T |
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| Q |
399 |
acaaatacttctcagcaatcgacatcttcggcactcgaaaccctaacctctgatccacaaccttagcattcaatcc |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41028897 |
acaaatacttctcagcaatcgacatcttcggcactcgaaaccctaacctctgatccacaaccttagcattcaatcc |
41028972 |
T |
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