View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2753_low_15 (Length: 485)
Name: NF2753_low_15
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Original strand, 26348049 - 26348506
Alignment:
| Q |
18 |
acttttaagttccatcaaagccatttctttaccaatacaaacccttaacccagcttgaaaaatagggtacttgaattgatttgaaggttgaaacacacca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26348049 |
acttttaagttccatcaaagccatttctttaccaatacaaacccttaacccagcttgaaaaatagggtacttgaattgatttgaaggttgaaacacacca |
26348148 |
T |
|
| Q |
118 |
tctttcaaccacctttcaggcttaaactctaaacaatctggaccccacaattcctccaacctacccattgcataaggatgataagtaaccctagtaccac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26348149 |
tctttcaaccacctttcaggcttaaactctaaacaatctggaccccacaattcctccaacctacccattgcataaggatgataagtaaccctagttccac |
26348248 |
T |
|
| Q |
218 |
ttttcacttttgtaccatctggtaaaacatcatcatccaaacaaaactttgaatcaaattgaattggtggatatagtctcatactttcatgtgctgctgc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26348249 |
ttttcacttttgtaccatctggtaaaacatcatcatccaaacaaaactttgaatcaaattgaattggtggatatagtctcatactttcatgtgctgctgc |
26348348 |
T |
|
| Q |
318 |
ttgtaaataatgcaatttcctaagttgttcaaaattcgttacaccaaaaatattgttttcatcatcatgtggtccaattactctttctgcttctaacaaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26348349 |
ttgtaaataatgcaatttcctaagttgttcaaaattcgttacaccaaaaatattgttt---tcatcatgtggtccaattactctttctgcttctaacaaa |
26348445 |
T |
|
| Q |
418 |
atctctttctcaacttctggattttttgctaacaaccaaaagaaacttgtgagtgatgatg |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26348446 |
atctctttctcaacttctggattttttgctaataaccaaaagaaacttgtgagtgatgatg |
26348506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University