View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_low_20 (Length: 431)
Name: NF2753_low_20
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_low_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 16 - 431
Target Start/End: Original strand, 41593992 - 41594407
Alignment:
| Q |
16 |
ctttgttgccagtaccatatttaccctgaatctgtagcaatcatagcagatcaaccattaatacacatacgtgacatcggaaaatagaaaagatttgaat |
115 |
Q |
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| T |
41593992 |
ctttgttgccagtaccatatttaccctgaatctgtagcaatcatagcagatcaaccattaatacacataagtgacatcggaaaatagaaaagatttgaat |
41594091 |
T |
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| Q |
116 |
aaatcaaaacatgtaacactcaccttcaatgaaaagtcagttaaatccaagagaagcaacttggcctcaaagtaatgagccaaagccttggcaagcactt |
215 |
Q |
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| T |
41594092 |
aaatcaaaacatgtaacactcaccttcaatgaaaagtcagttaaatccaagagaagcaacttggcctcaaagtaatgagccaaagccttggcaagcactt |
41594191 |
T |
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| Q |
216 |
gttggtaaagttcttcaagacaaaaaaggttgataaaggaaaatatagttagcttaaggttttcaacatagtatttcaatccatgattattgaaatcgag |
315 |
Q |
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| T |
41594192 |
gttggtaaagttcttcaagacaaaaaaggttgataaaggaaaatatagttagcttaaggttttcaacatagtatttcaatccatgattattgaaatcgag |
41594291 |
T |
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| Q |
316 |
attcaattatgaatcagaaactctattctcgatatcgtgaatacaatcttattatgaatcaaatacaaattttggtatagaattttattacgaattttaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41594292 |
attcaattatgaatcagaaactctattctcgatatcgtgaatacaatcttattatgaatcaaatacaaattttggtatagaattttattacgaattttaa |
41594391 |
T |
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| Q |
416 |
aaaagtaaactaaaaa |
431 |
Q |
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| T |
41594392 |
aaaagtaaactaaaaa |
41594407 |
T |
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Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 2486923 - 2486827
Alignment:
| Q |
133 |
actcaccttcaatgaaaagtcagttaaatccaagagaagcaacttggcctcaaagtaatgagccaaagccttggcaagcacttgttggtaaagttct |
229 |
Q |
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| T |
2486923 |
actcaccttcaatgaaaagtcagttacatcgaagagaagcaacttggcctcaaagtagtgagttaaagccttggcaagcacctgttggtaaagttct |
2486827 |
T |
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