View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_low_21 (Length: 429)
Name: NF2753_low_21
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 17 - 425
Target Start/End: Complemental strand, 24751801 - 24751393
Alignment:
| Q |
17 |
attatacgcagcagcactatgaatagaaactatgtagagaagctgtgtgactgaaaggataattatgaaagcttccatagttttctgcaaaaagaggaaa |
116 |
Q |
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|||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24751801 |
attatatgcagcagcaccatgaatagcaactatgtagagaagctgtgtgactgaaaggataattatgaaagcttccatggttttctgcaaaaagaggaaa |
24751702 |
T |
|
| Q |
117 |
tttcaagagttaaaaatatatagtcaccaagaaaattattaaatgattcttttcttgtcttaccagacgtgcatttctaatttgaagctcaatctctttc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24751701 |
tttcaagagttaaaaatatatagtcaccaagaaaattattaaatgattcttttcttgtcttaccagacgtgcatttctaatttgaagctcaatctctttc |
24751602 |
T |
|
| Q |
217 |
catgcaaatctgtagaagttaaaattcttattatatcaatataatttcacaattttgtgcatgatttaattgaaagcaaatttggtaaaatcactgtgat |
316 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24751601 |
catgcaaatctgtagaagttaaaattcttgttatatcaatataatttcacaatttcgtgcatgatttaattgaaagcaaatttggtaaaatcactgtaat |
24751502 |
T |
|
| Q |
317 |
tttaacaaaagttatattttgaagtttgaacaaaatcacactactaccatgattttatcaaattcatcgtcaatccaaatatgcatttggtaagataaaa |
416 |
Q |
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||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24751501 |
tttgacaaaagttacactttgaagtttgaacaaaatcacactactaccatgattttatcaaattcatcgtcaatccaaacatgcatttggtaagataaaa |
24751402 |
T |
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| Q |
417 |
gaagagcaa |
425 |
Q |
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||||||||| |
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| T |
24751401 |
gaagagcaa |
24751393 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 21742953 - 21743038
Alignment:
| Q |
23 |
cgcagcagcactatgaatagaaactatgtagagaagctgtgtgactgaaaggataattatgaaagcttccatagttttctgcaaaa |
108 |
Q |
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||||||||||| |||||||| | ||||||||| ||||||||| ||| ||||||||| | ||||| ||||||||||||||||||| |
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| T |
21742953 |
cgcagcagcaccatgaatagcagctatgtagaaaagctgtgtagctgtaaggataatcagaaaagcctccatagttttctgcaaaa |
21743038 |
T |
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