View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2753_low_25 (Length: 398)
Name: NF2753_low_25
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_low_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 2 - 382
Target Start/End: Original strand, 6938744 - 6939121
Alignment:
| Q |
2 |
gaaagagtacacctgagttattaaaaaatagagacaaaaataccgacggaaacatttgaaggatcattgtttgaaggcatttattggaggattaaaaatt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6938744 |
gaaagagtacacctgagttattaaaaaatagagacaaaa-taccgacagaaacatttgaaggatcattgtttgaaggcatttattggaggattaaaaatt |
6938842 |
T |
|
| Q |
102 |
gaatataatttatatatttataagctttaaaaaattatgcaaccnnnnnnnnnnnaatgnnnnnnnttgaaggtgtcgagatggtgccccaatttataag |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||| ||||||||| |
|
|
| T |
6938843 |
gaatataatttatatatttataagctttaaaaaattatgcaacctttttttttt--atgaaaaaaattgaaggtgtcgaaatggtgccccgatttataag |
6938940 |
T |
|
| Q |
202 |
ctcaaagaacacttttaaaggaatttacatttaccttcatattagttttatttttaaaaatttaatttccacttggatacgttcttagacatgttaaaca |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6938941 |
ctcaaagaacacttttaaaggaatttacatttaccttcgtattagttttatttttaaaaatttaatttccacttggatacgttcttagacatgttaaaca |
6939040 |
T |
|
| Q |
302 |
ctatgcaagtacctctcaattctcatagtactgggggaatttgaaccttgactcgctatgttctcatctaaggcataaaat |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6939041 |
ctatgcaagtacctctcaattctcatagtactgggggaatttgaaccttgactcgctatgttctcatctaaggcataaaat |
6939121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University