View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_low_27 (Length: 390)
Name: NF2753_low_27
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 35 - 370
Target Start/End: Complemental strand, 52446231 - 52445904
Alignment:
| Q |
35 |
cacagagcaatacaacacaaacacagagtgaatccgaaagaacaaaacaacgtcacatacacatgcactgcgactatgaatcatcaataataaaatgaaa |
134 |
Q |
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| T |
52446231 |
cacaaagcaatacaacacaaacacaaagtgaatccgaaagaacgaaacaacgtcacatacacatgcactgcgactatgaatcatcaatgataaaatgaaa |
52446132 |
T |
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| Q |
135 |
caatctaaaaagaacaaaaccagagacacgtacattgcgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacaccaataa |
234 |
Q |
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| T |
52446131 |
caatctaaaaagaacaaaaccagagacacatacattgtgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacgccaataa |
52446032 |
T |
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| Q |
235 |
taaaataatgaacatcaacataactatacattatgattgtgaacagagcatcaactcaaccaaagcattatacaacaacacatgaagtcatgaagagtaa |
334 |
Q |
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| T |
52446031 |
taaaataatgaacatcaacacaactatacattatgattgtgaacagagtatcaactcgaccaaagcattatacaacaacacat--------gaagagtaa |
52445940 |
T |
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| Q |
335 |
atcaaacatcaacatcatcatacgtgtcacggttca |
370 |
Q |
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| T |
52445939 |
atcaaacatcaacatcatcatacgtgtcagggttca |
52445904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 35 - 316
Target Start/End: Complemental strand, 52447167 - 52446890
Alignment:
| Q |
35 |
cacagagcaatacaacacaaacacagagtgaatccgaaagaacaaaacaacgtcacatacacatgcactgcgactatgaatcatcaataataaaatgaaa |
134 |
Q |
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| T |
52447167 |
cacaaagcaatacaacacaagcacaaagtgaatctgaaagaacaaaacaacgtaacaaacacatacattgcgattatgaatcatcaataataaaatgaaa |
52447068 |
T |
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| Q |
135 |
caatctaaaaagaacaaaaccagagacacgtacattgcgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacaccaataa |
234 |
Q |
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| T |
52447067 |
caatctacaaa---caaaaccacatacacatccattactattgaaattgt-aatcatccctaaattaaaacaataaaaacgtgtaaataaacaccaataa |
52446972 |
T |
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| Q |
235 |
taaaataatgaacatcaacataactatacattatgattgtgaacagagcatcaactcaaccaaagcattatacaacaacaca |
316 |
Q |
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|| || |||||||||||||||||| |||||||| ||||||| | ||||||||||||||| |||||||||||||||||||| |
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| T |
52446971 |
tagaacaatgaacatcaacataaccatacattacgattgtggatagagcatcaactcaattgaagcattatacaacaacaca |
52446890 |
T |
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