View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_low_31 (Length: 373)
Name: NF2753_low_31
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 11 - 357
Target Start/End: Original strand, 43132714 - 43133064
Alignment:
| Q |
11 |
caaaggagtactaaatccattaatttgtgtagatagtgtaccatggttgcacaaatagtcaaatacttgtagatattcctgcnnnnnnnntctataatac |
110 |
Q |
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| T |
43132714 |
caaaggagtactaaatccattactctgtgtagatagtgtaccatggttgcacaaatagtcaaatacttgtagatattcctgcaaaaaaattctataatac |
43132813 |
T |
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| Q |
111 |
taactaaaaacatttaaaataaattcccctgctttggctaggattgagaattttcta----tgtccttcacaatttcactaatagcagttttaaccatat |
206 |
Q |
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| T |
43132814 |
taactaaaaacatttaaaataaattcccctgctttggctaggattgagaattttctatctatgtccttcacaatttcactaatagcagttttaaccatat |
43132913 |
T |
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| Q |
207 |
ttacaggattatatcccacaaagactgcaaaaatctgaagatccagaatcgccgccatcgagttacggtaacatattcttaaatgaagatgaattcaaca |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43132914 |
ttacaggattatatcccacaaagactgcaaaaatctgaagatccagaatcgccgccatcgagttacgataacatattcttaaatgaagatgaattcaaca |
43133013 |
T |
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| Q |
307 |
agcctcccccagaattaccaccacaaataccagtgacaataacacaagaag |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43133014 |
agcctcccccagaattaccaccacaaataccagtgacaataacacaagaag |
43133064 |
T |
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