View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_low_35 (Length: 329)
Name: NF2753_low_35
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 9 - 317
Target Start/End: Complemental strand, 31796818 - 31796510
Alignment:
| Q |
9 |
agatgaagcaattggaagagaggaaagggcattgatagtatcaaagagcatatacatagtgtgcataggaagtgatgacattgctaatacttatgctcaa |
108 |
Q |
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| T |
31796818 |
agatgaagcaattggaagagaggaaagggcattgatagtatcaaagagcatatacatagtgtgcataggaagtgatgacattgctaatacttatgctcaa |
31796719 |
T |
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| Q |
109 |
acaccatttcggcgttttcagtatgatattcaatcatacacagatttcatggcttctgaagcctcaaaattcttgcaggtatgtctttggaatacacata |
208 |
Q |
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| T |
31796718 |
acaccatttcgacgttttcagtatgatattcaatcatacacagatttcatggcttatgaagcctcaaaattcttgcaggtatgtctttggaatacacata |
31796619 |
T |
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| Q |
209 |
tgaaccataatattgcggtaaaatactgtcattgtagtcacagttgcagttgcgttgtcattgcatagatctctgaaatcttaatattgcggccgcaatt |
308 |
Q |
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| T |
31796618 |
tgaaccataatattgtggtaaaatacggtcactgtagtcacaattgcagttgtgatgccattgcagagatctctaaaatcattatattgcggccgcaatt |
31796519 |
T |
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| Q |
309 |
gtggttgca |
317 |
Q |
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| T |
31796518 |
gtggttgca |
31796510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 192
Target Start/End: Original strand, 8938252 - 8938403
Alignment:
| Q |
41 |
tgatagtatcaaagagcatatacatagtgtgcataggaagtgatgacattgctaatacttatgctcaaacaccatttcggcgttttcagtatgatattca |
140 |
Q |
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| T |
8938252 |
tgataatatcaaagagtgtatacattatttgcataggaagtaatgacattgccaatacttatgctcaaacaccatataggagagtgaagtatgatattcg |
8938351 |
T |
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| Q |
141 |
atcatacacagatttcatggcttctgaagcctcaaaattcttgcaggtatgt |
192 |
Q |
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| T |
8938352 |
atcatacacagacttattggcttcatatgcctcaaacttcttgcaagtatgt |
8938403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 8946610 - 8946686
Alignment:
| Q |
41 |
tgatagtatcaaagagcatatacatagtgtgcataggaagtgatgacattgctaatacttatgctcaaacaccattt |
117 |
Q |
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||||| |||||||||| ||||||| | |||||||| |||||||||||| ||||||||| |||||||||||||| |
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| T |
8946610 |
tgataatatcaaagagtgtatacattatttgcataggggctgatgacattgccaatacttattctcaaacaccattt |
8946686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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