View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_low_39 (Length: 295)
Name: NF2753_low_39
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 39001050 - 39001322
Alignment:
| Q |
1 |
acaacttggatcacaaaagctgtgcttcctagtatgattaacaacaaaaaaggagctattattaacattggttctggttccactgttgtgattccttcat |
100 |
Q |
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||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39001050 |
acaacttggattactaaagctgtgcttcctagtatgattaagaacaaaaaaggagctattattaacattggttctggttccactgttgtgattccttcat |
39001149 |
T |
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| Q |
101 |
atcctcttgtcacactttatgcagcttcaaaagcgtaagcaagctctataaatgtgtgtttttatttatcaaaatgcagtcataaagttcgtatattaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39001150 |
atcctcttgtcacactttatgcagcttcaaaagcgtaagcaagctctataaatgtgtgtttttatttatcaaaatgcagtcataaagttcatatattaaa |
39001249 |
T |
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| Q |
201 |
catatgttatttattcaattttattcccttttcttattctttctaaaccatgcttatggccttttagattattaagtacttcat |
284 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39001250 |
catatgtta----------tttatgcccttttcttattctttctaaaccatgcttatggccttttagatta-aaagtacttcat |
39001322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 38996419 - 38996596
Alignment:
| Q |
1 |
acaacttggatcacaaaagctgtgcttcctagtatgattaacaacaaaaaaggagctattattaacattggttctggttccactgttgtgattccttcat |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||| |||||| ||||||| | |
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| T |
38996419 |
acaacttggattacaaaagctgtgcttcctagtatgattaagaagagaaaaggagctattattaacattggttctggttccagtgttgtacttccttctt |
38996518 |
T |
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| Q |
101 |
atcctcttgtcacactttatgcagcttcaaaagcgtaagcaagctctataaatgtg-tgtttttatttatcaaaatgca |
178 |
Q |
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||||||||||||| |||||||||| ||||||||||||| | |||||||||| || | |||||||||||||||||||| |
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| T |
38996519 |
ttcctcttgtcacaatttatgcagcatcaaaagcgtaag-tatctctataaatttgttctttttatttatcaaaatgca |
38996596 |
T |
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