View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_low_4 (Length: 643)
Name: NF2753_low_4
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 247 - 625
Target Start/End: Original strand, 25615525 - 25615900
Alignment:
| Q |
247 |
cagatggatcatgagcagcaagacaagccatcctttttcgctatcatcaaagaaggcttcaacaccaagtgcatggtaattcatttgtacttttgttctt |
346 |
Q |
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| T |
25615525 |
cagatggatcatgagcagcaagacaagccatcctttttcgctatcatcaaagaaggcttcaacaccaagtgcatggtaattcatttgtacttttgttctt |
25615624 |
T |
|
| Q |
347 |
catcatctcatgcatgctaaaatttgtaatctttgttaataagaaatacctgtctttctttggatgctgacgagaacgttatagatatgaagaatgnnnn |
446 |
Q |
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| T |
25615625 |
catcatctcatgcatgctaaaatttgtaatctttgttaataagaaatacctgtctgtctttggatgctgatgagaaagttatagatat---gaatgaaaa |
25615721 |
T |
|
| Q |
447 |
nnngttcatagaaaaatgtaattaagctaggtcgttagttttccaagtttaaatctcagaagtcctaattaaaactcatccagtactgcttagctcacca |
546 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25615722 |
aaagttcatagaaaaatgttattaagctaggtcgttagttttccaagtttaaatctcagaagtcctaattaaaactcatccagtactgcttagctcacca |
25615821 |
T |
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| Q |
547 |
accgagattatcgtttttaaagaaaatcaaaatatgtttacttttttggaccgtccatctcgattggacggtcacggat |
625 |
Q |
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| T |
25615822 |
accgagattatcgtttttaaagaaaatcaaaatatgtttacttttttggaccgtccatctcgattggacggtcacggat |
25615900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 25615285 - 25615506
Alignment:
| Q |
1 |
gcaatggtattttgccgtatgcgaaaactcaagggtagtttggaatttagatgaatttgagtgttggttaaataatttgttaatttaaatgtctgagatg |
100 |
Q |
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| T |
25615285 |
gcaatggtattttgccgtatgcgaaaactcaagagtagtttggaatttagatgaatttgagtgttggtaaaataatttgttaatttaaatgtctgagatg |
25615384 |
T |
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| Q |
101 |
gtgttgtgttctgtttttatggttttcttcttgttaattttctgtttataattcaaaactttggcacttttagtgatcatgttattctatataatgaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25615385 |
gtgttgtgttctgtttttatggttttcttcttgttaattttctgtttataattcaaaacttttgcacttttagtgatcatgttattctatataatgaagt |
25615484 |
T |
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| Q |
201 |
ttatctttgcttatatatacgg |
222 |
Q |
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| T |
25615485 |
ttatctttgcttatataaacgg |
25615506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 146
Target Start/End: Original strand, 25609684 - 25609784
Alignment:
| Q |
50 |
gatgaatttgagtgttggttaa---ataatttgttaatttaaatgtctgagatggtgttgtgttctgtttttatggttttcttctt-gttaattttctgt |
145 |
Q |
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|||||||||| ||||||||||| ||||||| || |||| ||||||||||||||||||||||||| |||| ||| ||| ||||| ||||| ||||||| |
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| T |
25609684 |
gatgaatttgggtgttggttaattaataatttattcatttcaatgtctgagatggtgttgtgttctattttaatgagttttttcttggttaagtttctgt |
25609783 |
T |
|
| Q |
146 |
t |
146 |
Q |
| |
|
| |
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|
| T |
25609784 |
t |
25609784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 248 - 310
Target Start/End: Original strand, 25609825 - 25609887
Alignment:
| Q |
248 |
agatggatcatgagcagcaagacaagccatcctttttcgctatcatcaaagaaggcttcaaca |
310 |
Q |
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|||||||| |||| || |||||||| |||||||| ||||| |||||||||||||||||||||| |
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| T |
25609825 |
agatggattatgatcaccaagacaaaccatccttcttcgcaatcatcaaagaaggcttcaaca |
25609887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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