View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_low_43 (Length: 283)
Name: NF2753_low_43
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 16300682 - 16300416
Alignment:
| Q |
1 |
ttaaagaagagaaaggctaatgcaaatggtcctaggcaaacagcggcttgctgggaacactttataaggttacctgatagtgaggttgacaaaccaactg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16300682 |
ttaaagaagagaaaggctaatgcaaatggtcctaggcaaacagcggcttgctgggaacactttataaggttacctgatagtgaggttgacaaaccaactg |
16300583 |
T |
|
| Q |
101 |
cttcttgtaaacattgtcaccaaagatacctgtgtgaccctaagactcatggtaccaaaaacttgaacacacatatcactaaatgtcttatccttcaatg |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16300582 |
ctgcttgtaaacattgtcaccaaagatacctgtgtgaccctaagactcatggtaccaaaaacttgaacacacatataactaaatgtcttatccttcaatg |
16300483 |
T |
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| Q |
201 |
ttttctaaaaaatggccccaaccaaaccattctctcatatccagctattgagggttctagtttggtt |
267 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
16300482 |
ttttttaaaaaatggccccaaccaaaccattctttcatatccagctgttgagggttctagtttggtt |
16300416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 22898179 - 22897913
Alignment:
| Q |
1 |
ttaaagaagagaaaggctaatgcaaatggtcctaggcaaacagcggcttgctgggaacactttataaggttacctgatagtgaggttgacaaaccaactg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22898179 |
ttaaagaagagaaaggctaatgcaaatggtcctaggaaaacagcggcttgctgggaacactttataaggttacctgatagtgaggttgacaaaccaactg |
22898080 |
T |
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| Q |
101 |
cttcttgtaaacattgtcaccaaagatacctgtgtgaccctaagactcatggtaccaaaaacttgaacacacatatcactaaatgtcttatccttcaatg |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22898079 |
ctgcttgtaaacattgtcaccaaagatacctgtgtgaccctaagactcatggtaccattaacttgaacacacatattactaaatgtcttatccttcaatg |
22897980 |
T |
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| Q |
201 |
ttttctaaaaaatggccccaaccaaaccattctctcatatccagctattgagggttctagtttggtt |
267 |
Q |
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|||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
22897979 |
ttttttaaaaaatggccccaaccaaaccattttttcatatccagctattgagggttctagtttggtt |
22897913 |
T |
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