View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_low_50 (Length: 249)
Name: NF2753_low_50
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 143 - 239
Target Start/End: Original strand, 39001483 - 39001579
Alignment:
| Q |
143 |
ttaagaaaaaattactttgcctcttcattgttatttatgtaaaataatgaaattattctgaaatagttgtattgatttaaaccaaatatgaattcat |
239 |
Q |
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| T |
39001483 |
ttaagaaaaaattactttgcctcttcattgttatttatgtaaaataatgaaattattctgaagtagttgtattgatttaaaccaaatatgaattcat |
39001579 |
T |
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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 39001444 - 39001482
Alignment:
| Q |
83 |
actatttgactataagcctttctgttttacttgaagtga |
121 |
Q |
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| T |
39001444 |
actatttgactataagcctttctgttttacttgaagtga |
39001482 |
T |
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