View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_low_51 (Length: 248)
Name: NF2753_low_51
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_low_51 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 10500487 - 10500730
Alignment:
| Q |
1 |
ttttgttgaagttttagattttagttattgtcaaaattacgtcgactcgctataacataatgtatttatgttattaatttaaatcttggttaacatgtag |
100 |
Q |
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| T |
10500487 |
ttttgttgaagttttagattttagttattgtcaaaattacgtcgactcgctataacataatgtatttatgttattaatttaaatcttgattaacatgtag |
10500586 |
T |
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| Q |
101 |
gatttgaacttccactagtggcatgttgtggcaatggaggaaagtacaactataacattcgtgctggttgtggagcaaccataaacattaatggtacaaa |
200 |
Q |
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| T |
10500587 |
ggtttgaacttccactggtggcttgttgtggcaatggaggaaagtacaactataacattcgtgctggttgtggagcaaccataaacataaatggtacaaa |
10500686 |
T |
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| Q |
201 |
cactgttgtgggttcatgtaaaaaaccatctactagaataatat |
244 |
Q |
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| T |
10500687 |
cactgttgtgggttcatgtaaaaaaccatcaactagaataatat |
10500730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 98 - 244
Target Start/End: Original strand, 10486144 - 10486290
Alignment:
| Q |
98 |
taggatttgaacttccactagtggcatgttgtggcaatggaggaaagtacaactataacattcgtgctggttgtggagcaaccataaacattaatggtac |
197 |
Q |
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| T |
10486144 |
tagggtttgagcttccactagtggcatgttgtggctatggaggggagtacaactatgacaatcgtgctagatgtggagaaaccataaatataaatggtac |
10486243 |
T |
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| Q |
198 |
aaacactgttgtgggttcatgtaaaaaaccatctactagaataatat |
244 |
Q |
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| T |
10486244 |
aagaatttttgtgggttcgtgcaaaagtccatctactagaataatat |
10486290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 239
Target Start/End: Original strand, 10503653 - 10503796
Alignment:
| Q |
90 |
ttaacatgtaggatttgaacttccactagtggcatgttgtggcaatggaggaaagtacaactataacattcgtgctggttgtggagcaaccataaacatt |
189 |
Q |
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| T |
10503653 |
ttaatatgtaggatttgagcttccacatgtggcatgttgtggctatggaggaaagtacaac------attcgtgttggctgtggagaaaccataaacata |
10503746 |
T |
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| Q |
190 |
aatggtacaaacactgttgtgggttcatgtaaaaaaccatctactagaat |
239 |
Q |
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| T |
10503747 |
aatggtacaaaaattgttgctggatcgtgtaaaaacccatctactagaat |
10503796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 244
Target Start/End: Original strand, 10509062 - 10509210
Alignment:
| Q |
90 |
ttaacatgtaggatttgaacttccactagtggcatgttgtggcaatggaggaaagtacaactataacattcgtgctggttgtggagcaaccataaacatt |
189 |
Q |
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| T |
10509062 |
ttaatatgtaggattcgagcttccatttgtggcatgttgtggctatggaggagagta------taacattggtgttggttgtggagcatccataaacata |
10509155 |
T |
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| Q |
190 |
aatggtacaaacactgttgtgggttcatgtaaaaaaccatctactagaataatat |
244 |
Q |
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| T |
10509156 |
aatggtacaaaaattgttgcaggttcatgcaaaaatccatcaactagaatcatat |
10509210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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