View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_low_55 (Length: 245)
Name: NF2753_low_55
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 55 - 231
Target Start/End: Original strand, 4443209 - 4443385
Alignment:
| Q |
55 |
taaatgtcatacaatactcatttttatcatgaagagtgctaactagtaactgacccatgaaaaggttatgtgcccaatccccaaagttgggaagagtttt |
154 |
Q |
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| T |
4443209 |
taaatgtcgtccaatactcatttttatcatgaagagtgctaactactaattgacccatgaaaaggttatgtgcctaatccccaaagttgggaagagtttt |
4443308 |
T |
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| Q |
155 |
atcaaatcctcaggtttaagactatgttccaacttattaggccaaattcatttagattcgtgggtgcagtgtatcat |
231 |
Q |
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| T |
4443309 |
atcaaatcctcatgtttaagactatgttccaacttattaggccaaattcattaagatttgtgggtgcagtgtatcat |
4443385 |
T |
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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 41
Target Start/End: Original strand, 4442762 - 4442797
Alignment:
| Q |
6 |
tttttctgaataaatttactcttcaaaatcgatttt |
41 |
Q |
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| T |
4442762 |
tttttctgaataaatttactcttcaaaatcgatttt |
4442797 |
T |
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