View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2753_low_58 (Length: 238)
Name: NF2753_low_58
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_low_58 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10500358 - 10500137
Alignment:
| Q |
1 |
tatcaacatatgtgattgcagctagtggaagatccttgcgaagttgagctagggcttccttcaactttaaattaaaatattgagatacttcattgtattg |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10500358 |
tatcaacatatgttattgcagctagtggaagatccttgcgaagttgagctagggcttccttcaactttaaattgaaatattgagatacttcattgtattg |
10500259 |
T |
|
| Q |
101 |
ctttgcacatccatatctatcctttatagctgatggaaaattggccaaaattaaaggcacacatccaattggtccagtgttgtgtatccaaaatgacctg |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10500258 |
ctttgcacaaccatatctatcctttatagctgatggaaaattagccaaaattaaaggcacacatccaattggtccagtgttgtgtatccaaaatgacctg |
10500159 |
T |
|
| Q |
201 |
gctcctaatttgtatatgttct |
222 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
10500158 |
gctcctaaattgtatatgttct |
10500137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 10485905 - 10485685
Alignment:
| Q |
2 |
atcaacatatgtgattgcagctagtggaagatccttgcgaagttgagctagggcttccttcaactttaaattaaaatattgagatacttcattgtattgc |
101 |
Q |
| |
|
||||||||||||||||||||| || |||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10485905 |
atcaacatatgtgattgcagcaagaggaagatcgacacgaagttgagctaatgcttccttcaactttaaattgaaatattgagatacttcattgtattgc |
10485806 |
T |
|
| Q |
102 |
tttgcacatccatatctatcctttatagctgatggaaaattggccaaaattaaaggcacacatccaattggtccagtgttgtgtatccaaaatgacctgg |
201 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| | ||| |||||||| || |||||||||||||||||||| |||| |
|
|
| T |
10485805 |
tttgcacaaccatagctatcctttatagctgatggaaaattagccaaaattaaaggaagacaaccaattggccctgtgttgtgtatccaaaatgatctgg |
10485706 |
T |
|
| Q |
202 |
ctcctaatttgtatatgttct |
222 |
Q |
| |
|
| ||||| ||| |||||||| |
|
|
| T |
10485705 |
cccctaaactgtgtatgttct |
10485685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10503384 - 10503163
Alignment:
| Q |
1 |
tatcaacatatgtgattgcagctagtggaagatccttgcgaagttgagctagggcttccttcaactttaaattaaaatattgagatacttcattgtattg |
100 |
Q |
| |
|
||||||||||||| |||||||| || |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10503384 |
tatcaacatatgttattgcagcaagaggaagatcgacacgaagttgagctaatgctttcttcaactttaaattaaaatattgagatacttcattgtattg |
10503285 |
T |
|
| Q |
101 |
ctttgcacatccatatctatcctttatagctgatggaaaattggccaaaattaaaggcacacatccaattggtccagtgttgtgtatccaaaatgacctg |
200 |
Q |
| |
|
||||||||| ||||| ||||||||||| || ||||||||||| |||||||| ||| || ||| ||||| | ||| ||||||||||||||||||| |
|
|
| T |
10503284 |
ctttgcacaaccataactatcctttattgcagatggaaaattagccaaaatggtaggagtgcaaccacttggtactgtgctgtgtatccaaaatgaccta |
10503185 |
T |
|
| Q |
201 |
gctcctaatttgtatatgttct |
222 |
Q |
| |
|
|| ||||| ||||||||||||| |
|
|
| T |
10503184 |
gcccctaaattgtatatgttct |
10503163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10508942 - 10508721
Alignment:
| Q |
1 |
tatcaacatatgtgattgcagctagtggaagatccttgcgaagttgagctagggcttccttcaactttaaattaaaatattgagatacttcattgtattg |
100 |
Q |
| |
|
|||||||||||||||||||||| | ||||| | ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10508942 |
tatcaacatatgtgattgcagcagaagaaagattgctacgaagttcagctagggcttccttcaacttaaaattaaaatattgagatacttcattgtattg |
10508843 |
T |
|
| Q |
101 |
ctttgcacatccatatctatcctttatagctgatggaaaattggccaaaattaaaggcacacatccaattggtccagtgttgtgtatccaaaatgacctg |
200 |
Q |
| |
|
||||||||| ||||| ||||||||||| || ||||||||||| |||||||||| ||| |||| || ||||||| ||| ||||||||||||||| || |
|
|
| T |
10508842 |
ctttgcacagccataactatcctttattgcagatggaaaatttgccaaaattacaggagcacaaccctttggtcctgtgccgtgtatccaaaatgatctt |
10508743 |
T |
|
| Q |
201 |
gctcctaatttgtatatgttct |
222 |
Q |
| |
|
|| ||||| || |||||||||| |
|
|
| T |
10508742 |
gcacctaaattatatatgttct |
10508721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 10481540 - 10481345
Alignment:
| Q |
1 |
tatcaacatatgtgattgcagctagtggaagatccttgcgaagttgagctagggcttccttcaactttaaattaaaatattgagatacttcattgtattg |
100 |
Q |
| |
|
|||| ||||||||||||||||| | |||||||| | ||||||| | | | |||||||||||||||| || |||||||| | ||||||||| ||||| |
|
|
| T |
10481540 |
tatctacatatgtgattgcagccaaaggaagatcatcacgaagtttaaccactgcttccttcaactttaggttgaaatattgcgctacttcattatattg |
10481441 |
T |
|
| Q |
101 |
ctttgcacatccatatctatcctttatagctgatggaaaattggccaaaattaaaggcacacatccaattggtccagtgttgtgtatccaaaatga |
196 |
Q |
| |
|
||||||||| |||| | ||||||| |||| |||||||||| ||||||| |||| | || ||||| ||||| |||||||||||||||||||| |
|
|
| T |
10481440 |
ctttgcacaaccattttcatccttttcagctaatggaaaattcaccaaaatataagggaggcagccaatgggtcctgtgttgtgtatccaaaatga |
10481345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 10545433 - 10545548
Alignment:
| Q |
1 |
tatcaacatatgtgattgcagctagtggaagatccttgcgaagttgagctagggcttccttcaactttaaattaaaatattgagatacttcattgtattg |
100 |
Q |
| |
|
|||| |||||||||||||||||| | ||||| |||| |||||||| | | |||||||||||||||| ||||||| ||||| ||||||||| ||||| |
|
|
| T |
10545433 |
tatctacatatgtgattgcagcttgaggaagttcctcacgaagttggtccaaagcttccttcaactttaggttaaaatgttgagctacttcattatattg |
10545532 |
T |
|
| Q |
101 |
ctttgcacatccatat |
116 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
10545533 |
ctttgcacaaccatat |
10545548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 11754220 - 11754177
Alignment:
| Q |
156 |
ggcacacatccaattggtccagtgttgtgtatccaaaatgacct |
199 |
Q |
| |
|
|||| ||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
11754220 |
ggcatacatccaatggggccagtgttgtgtatccaaaatgacct |
11754177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University