View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_low_6 (Length: 619)
Name: NF2753_low_6
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 530; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 20 - 608
Target Start/End: Original strand, 16281202 - 16281801
Alignment:
| Q |
20 |
aatccgctctctcctccttcctttccgcggttctccctcaccgaatcagcgtcgaagagaacgatctaacggttttgaatccagatcgtgattcctccgt |
119 |
Q |
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| T |
16281202 |
aatccgctctctcctccttcctttccgcggttctccctcaccaaatcagcgtcgaagagaacgatctaacggttttgaatccagatcgtgattcctccgt |
16281301 |
T |
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| Q |
120 |
tgccgaatttcgaaattgcgaggaggttcgttacggtttttagtttacgttttgtgaagagttaatgtgcttagatattcgtgtagattttttagttgat |
219 |
Q |
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| T |
16281302 |
tgccgaatttcgaaattgcgaggaggttcgttacggtttttagtttacgttttgtgaagagttaatgtgctttgatattcgtttagattttttagttgat |
16281401 |
T |
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| Q |
220 |
tttcgttggttactgttagcatttcattttactctgaaaattgtgattctatatgctttacgtgtttgaatttttgactgtgtcgccggctttgaaaatt |
319 |
Q |
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| T |
16281402 |
tttcgttggttactgttagcatttcattttactctgacaattgtgattctatgtgctttacgtgtttgaatttttgactgtgtcgccggctttgaaaatt |
16281501 |
T |
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| Q |
320 |
gtgagcttagtttcgattttcagttcacgttttccttctctgatgaagattttatgtatttagattc-----------ttgtgttgattttcacttgagg |
408 |
Q |
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| T |
16281502 |
gtgagcttagtttcgattttcagttcacgttttccttctctgatgaagattttatgtatttagattcttgtgtagattttgtgttgattttcacttgagg |
16281601 |
T |
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| Q |
409 |
tgaggttagcattttcatttcacttgaaaattgagattctatgtgatttacgtgtttcaatttttgattgcgttgccgaatttcaaaattgcgaggttag |
508 |
Q |
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| T |
16281602 |
tgaggttagcattttcatttcacttgaaaattgagattctatgtgatttacgtgtttgaatttttgattgcgttgccgaatttcaaaattgcgaggttag |
16281701 |
T |
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| Q |
509 |
tttatgagttcacgttttgcttctccaatgaagagttgatgcgttttgatatttgcgtatattttgtgttgatcttcgtatgttactgttagattttcat |
608 |
Q |
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| T |
16281702 |
tttatgagttcacgttttgcttctccaatgaagagttgatgcgttttgatctttgcgtatattttgtgttgattttcgtatgttactgttagattttcat |
16281801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 214 - 324
Target Start/End: Original strand, 16282849 - 16282959
Alignment:
| Q |
214 |
gttgattttcgttggttactgttagcatttcattttactctgaaaattgtgattctatatgctttacgtgtttgaatttttgactgtgtcgccggctttg |
313 |
Q |
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| T |
16282849 |
gttgatttttgttagaaactgttgccatttcattttactctgaaaattgagattctatgtgctcgtcgtttttgaatatttgattgtgttgccgaatttt |
16282948 |
T |
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| Q |
314 |
aaaattgtgag |
324 |
Q |
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| T |
16282949 |
aaaattgtgag |
16282959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 421 - 507
Target Start/End: Original strand, 16282876 - 16282963
Alignment:
| Q |
421 |
tttcatttcact-tgaaaattgagattctatgtgatttacgtgtttcaatttttgattgcgttgccgaatttcaaaattgcgaggtta |
507 |
Q |
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| T |
16282876 |
tttcattttactctgaaaattgagattctatgtgctcgtcgtttttgaatatttgattgtgttgccgaattttaaaattgtgaggtta |
16282963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 16282405 - 16282448
Alignment:
| Q |
228 |
gttactgttagcatttcattttactctgaaaattgtgattctat |
271 |
Q |
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| T |
16282405 |
gttactgttagcattacatttcactctgaaaattgagattctat |
16282448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 486 - 547
Target Start/End: Original strand, 16283802 - 16283861
Alignment:
| Q |
486 |
gaatttcaaaattgcgaggttagtttatgagttcacgttttgcttctccaatgaagagttga |
547 |
Q |
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|||| ||||||||| |||||||||||| |||||| |||||| |||||||||||||| |||| |
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| T |
16283802 |
gaatatcaaaattgtgaggttagttta--agttcatgttttgattctccaatgaagaattga |
16283861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 16281769 - 16281826
Alignment:
| Q |
214 |
gttgattttcgttggttactgttagcatttcattttactctgaaaattgtgattctat |
271 |
Q |
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| T |
16281769 |
gttgattttcgtatgttactgttagattttcatttcgctctgaaaattgagattctat |
16281826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 16283213 - 16283266
Alignment:
| Q |
214 |
gttgattttcgttggttactgttagcatttcattttactctgaaaattgtgatt |
267 |
Q |
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| T |
16283213 |
gttgattttcgttcggtattgttagcatttcatttcgctctgaaaattgagatt |
16283266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 16282021 - 16282053
Alignment:
| Q |
244 |
cattttactctgaaaattgtgattctatatgct |
276 |
Q |
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| T |
16282021 |
cattttactctgaaaattgtgattctatgtgct |
16282053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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