View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_low_68 (Length: 216)
Name: NF2753_low_68
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 33806369 - 33806161
Alignment:
| Q |
1 |
taacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccacagacttattggactatgcagaatgatatccgt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33806369 |
taacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccacagacttattggactatgcagaatgataaccgt |
33806270 |
T |
|
| Q |
101 |
aaaatcattgataaggtcggccatgttgtggcatttgcaaatatcagggacaattcttggagattctatgataacaataggtctttgttatagcaattca |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
33806269 |
aaaatcgttgataaggtcggccatgttgtggcatttgcaaatatcagggacaattcttggagattctatgataacaataggtctttgttatggaaattca |
33806170 |
T |
|
| Q |
201 |
ttttctctg |
209 |
Q |
| |
|
||||||||| |
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|
| T |
33806169 |
ttttctctg |
33806161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 33811935 - 33812143
Alignment:
| Q |
1 |
taacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccacagacttattggactatgcagaatgatatccgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33811935 |
taacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccacagacttattggactatgcagaatgataaccgt |
33812034 |
T |
|
| Q |
101 |
aaaatcattgataaggtcggccatgttgtggcatttgcaaatatcagggacaattcttggagattctatgataacaataggtctttgttatagcaattca |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
33812035 |
aaaatcgttgataaggtcggccatgttgtggcatttgcaaatatcagggacaattcttggagattctatgataacaataggtctttgttatggaaattca |
33812134 |
T |
|
| Q |
201 |
ttttctctg |
209 |
Q |
| |
|
||||||||| |
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|
| T |
33812135 |
ttttctctg |
33812143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 31027609 - 31027819
Alignment:
| Q |
1 |
taacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccacagacttattggactatgcagaatgatatccgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| |||||||||||| || ||||||||||||||||| |||| |||| |
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| T |
31027609 |
taacttgacctatgttcttgagatcaaatcaggtaatgttattctttcagctggttacaaaactccacaaacatattggactatgcagaaggataaccgt |
31027708 |
T |
|
| Q |
101 |
aaaatcattgataaggtcggccatgttgtggcatttgcaaatatcagggacaattcttggagattctatgataacaataggtctttgttatagcaattca |
200 |
Q |
| |
|
||||| || ||||||||||||||||||||||| ||||||||| |||| |||||||||||||| |||||||||||||||| ||||||||||| |||||||| |
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| T |
31027709 |
aaaataatagataaggtcggccatgttgtggcgtttgcaaatctcagtgacaattcttggaggttctatgataacaataagtctttgttatggcaattca |
31027808 |
T |
|
| Q |
201 |
ttttctctgct |
211 |
Q |
| |
|
||||||||||| |
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|
| T |
31027809 |
ttttctctgct |
31027819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 33801887 - 33801679
Alignment:
| Q |
1 |
taacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccacagacttattggactatgcagaatgatatccgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
33801887 |
taacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccacagacttattggactatgcagaatgataaccgt |
33801788 |
T |
|
| Q |
101 |
aaaatcattgataaggtcggccatgttgtggcatttgcaaatatcagggacaattcttggagattctatgataacaataggtctttgttatagcaattca |
200 |
Q |
| |
|
|||| ||| | ||| || |||||||||| ||||||||| |||| || ||||||||||| |||||||||||||||| ||||||||||| |||||||| |
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| T |
33801787 |
aaaacgattaacaagaatggtgatgttgtggcttttgcaaatctcagtgataattcttggaggttctatgataacaataagtctttgttatggcaattca |
33801688 |
T |
|
| Q |
201 |
ttttctctg |
209 |
Q |
| |
|
|| |||||| |
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|
| T |
33801687 |
ttgtctctg |
33801679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 49462580 - 49462784
Alignment:
| Q |
5 |
ttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccacagacttattggactatgcagaatgatatccgtaaaa |
104 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |||| ||||||| |||||||||||||||| | |||| | | |||| |
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| T |
49462580 |
ttgacctatgttcttgagattaaatctggtaatgttgttctttctgctggttttaaaattccacaggtttattggactatgcaggaggataacaggaaaa |
49462679 |
T |
|
| Q |
105 |
tcattgataaggtcggccatgttgtggcatttgcaaatatcagggacaattcttggagattctatgataacaataggtctttgttatagcaattcatttt |
204 |
Q |
| |
|
||||||||||| || |||||||||| | || ||| | || ||||||||||||||||| |||||| |||| | ||||||||| | |||||||||||| |
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| T |
49462680 |
ccattgataaggatggtcatgttgtggtttcggcgaatcttagtgacaattcttggagattttatgatgacaagaagtctttgttgtggcaattcatttt |
49462779 |
T |
|
| Q |
205 |
ctctg |
209 |
Q |
| |
|
||||| |
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|
| T |
49462780 |
ctctg |
49462784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 7815183 - 7815117
Alignment:
| Q |
1 |
taacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactcca |
67 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||| ||||| | ||||||||| |||||||||||||| |
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|
| T |
7815183 |
taacttgacctttgttattgagatcaaatctggtaatgttatactttcagcttgtttcaaaactcca |
7815117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 10071377 - 10071262
Alignment:
| Q |
1 |
taacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccacagacttattggactatgcagaatgatatccgt |
100 |
Q |
| |
|
||||| ||||||||||||| |||| ||||||||| ||| | || |||| |||||||| ||||||||| |||||| | |||||||||||| | || ||| |
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| T |
10071377 |
taactcgacctatgttcttcagataaaatctggtaatgctattgtttctgctggtttggaaactccactgacttactagactatgcagaagggtaaccgc |
10071278 |
T |
|
| Q |
101 |
aaaatcattgataagg |
116 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
10071277 |
aaaacaattgataagg |
10071262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 2529715 - 2529639
Alignment:
| Q |
29 |
tctggtgatgttgttctttcagctggtttcaaaactccacagacttattggactatgcagaatgatatccgtaaaat |
105 |
Q |
| |
|
|||||| ||||| ||||||| | ||||| || |||||||| |||||||| ||||||| ||||||||||| ||||| |
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| T |
2529715 |
tctggtaatgttcttctttccacaggtttacaatctccacagccttattggtctatgcaaaatgatatccgaaaaat |
2529639 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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