View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_low_69 (Length: 215)
Name: NF2753_low_69
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_low_69 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 8e-88; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 1164095 - 1163912
Alignment:
| Q |
14 |
cataggcaatttttcttgaagcagagcagattaataagacattaacggaacatggtatgtttataaactaggtatttcattatatgaactccttctgtgc |
113 |
Q |
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| T |
1164095 |
cataggcaatttttcttgaagcagtgcagattaataagacattaacggaacatggtatgtttataaactaggtatttcattgtatgaactccttctgtgc |
1163996 |
T |
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| Q |
114 |
ttgttctatcaagcagcgatgcttaagttcttcttccctaa-tctcattcccatgaaactcaagctccggcttcatgtcggcat |
196 |
Q |
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| T |
1163995 |
ttgttctatcaagcagcgatgcttaagttctttttccctaattctcattcccatgaaactcaagctccggcttcatgtcggcat |
1163912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 2376186 - 2376123
Alignment:
| Q |
131 |
gatgcttaagttcttcttccctaatctcattcccatgaaactcaagctccggcttcatgtcggc |
194 |
Q |
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| T |
2376186 |
gatgcttacgttcttcttccctaatctcattcacatgaaactcaagctccagcttcatgtcggc |
2376123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 2379885 - 2379948
Alignment:
| Q |
131 |
gatgcttaagttcttcttccctaatctcattcccatgaaactcaagctccggcttcatgtcggc |
194 |
Q |
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| T |
2379885 |
gatgcttacgttcttcttccctaatctcattcacatgaaactcaagctccagcttcatgtcggc |
2379948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 1524612 - 1524685
Alignment:
| Q |
121 |
atcaagcagcgatgcttaagttcttcttccctaatctcattcccatgaaactcaagctccggcttcatgtcggc |
194 |
Q |
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||||||| |||||||||| ||||| ||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1524612 |
atcaagcggcgatgcttacattctttttctctaatctcattcccatgaaactcaagctccagcttcatgtcggc |
1524685 |
T |
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