View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2753_low_7 (Length: 580)

Name: NF2753_low_7
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2753_low_7
NF2753_low_7
[»] chr8 (3 HSPs)
chr8 (3-334)||(6495095-6495434)
chr8 (486-574)||(14935680-14935768)
chr8 (428-484)||(6494990-6495048)
[»] chr4 (3 HSPs)
chr4 (486-574)||(1062025-1062113)
chr4 (486-552)||(31606015-31606081)
chr4 (486-552)||(31954085-31954151)
[»] chr5 (2 HSPs)
chr5 (490-574)||(34024300-34024384)
chr5 (486-552)||(12633055-12633121)
[»] chr6 (4 HSPs)
chr6 (492-574)||(34977280-34977362)
chr6 (486-552)||(26125103-26125170)
chr6 (486-552)||(25571870-25571937)
chr6 (486-552)||(26006338-26006405)
[»] chr1 (2 HSPs)
chr1 (486-569)||(20087557-20087640)
chr1 (486-552)||(45291677-45291743)
[»] chr2 (1 HSPs)
chr2 (486-552)||(23362923-23362990)


Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 3 - 334
Target Start/End: Complemental strand, 6495434 - 6495095
Alignment:
Q  3 tttattataatctgccaacctaaactttcggtaagatattgctgtatactaaaatatattttggtacaataatgaaatcatgtcagtggagtctgcttga 102  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  6495434 tttattataatctgccaaccttaactttcggtaagatattgctgtatactaaaatatattttggtaccataatgaaatcatgtcagtggaatctgcttga 6495335  T
Q  103 ag----agccacggcatccattaattctacctagatcatacttcctccctt-cctttataagcacttgttgcatatttcactttttaggaagattggttg 197  Q
     |    |||||||||||||||| ||||| ||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  6495334 tgagcaagccacggcatccattgattcttcctagattatacttcctcccttgcttttataagcacttgttgcatatttcactttttaggaagattggttg 6495235  T
Q  198 t---gtaattagtttatacaatatactttttgtg-taactattatttataaaattacttttctgtacacatgactgattcaataatttttaaaagcaagt 293  Q
    |   ||||||||| |||| |||||| ||| |||| ||||||||||| || ||||||||||| | |||||| ||||||| |||||||||||||||| || |    
T  6495234 tgtagtaattagtatatataatatattttgtgtgttaactattattaat-aaattacttttgtatacacacgactgatccaataatttttaaaagtaaat 6495136  T
Q  294 gacgtttaaagcaatgttgaatatacgagcctcttcagttt 334  Q
     |||||||||| ||||||||||||| |||||||||| ||||    
T  6495135 cacgtttaaagtaatgttgaatatatgagcctcttcggttt 6495095  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 486 - 574
Target Start/End: Original strand, 14935680 - 14935768
Alignment:
Q  486 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatctcac 574  Q
    ||||||||||||||||||||||||||||||||| | |||||| |||| |||||||||||||||||||||||||||||||||||| ||||    
T  14935680 atcttaataatatacaaatgggaagaaacaaatggcaaaaaaatttgtaccaatccaatgtgtcaaatcctcaagccccttcatgtcac 14935768  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 484
Target Start/End: Complemental strand, 6495048 - 6494990
Alignment:
Q  428 agttatttctcgaaaccttaaaaacacaaaaa--tattattcaagagtgatctctcgaa 484  Q
    ||||||||||| ||||||| |||||| |||||  |||||||| ||||||||||||||||    
T  6495048 agttatttctcaaaacctttaaaacataaaaaaatattattcgagagtgatctctcgaa 6494990  T

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Target: chr4 (Bit Score: 81; Significance: 8e-38; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 486 - 574
Target Start/End: Complemental strand, 1062113 - 1062025
Alignment:
Q  486 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatctcac 574  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1062113 atcttaataatatacaaatgggaagaaacaaatagcaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatgtcac 1062025  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 552
Target Start/End: Original strand, 31606015 - 31606081
Alignment:
Q  486 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaa 552  Q
    |||||||||||||||||||| ||| | | |||||| |||||| |||||  |||||||||||||||||    
T  31606015 atcttaataatatacaaatgtgaaaacataaatagaaaaaaaatttgcttcaatccaatgtgtcaaa 31606081  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 552
Target Start/End: Complemental strand, 31954151 - 31954085
Alignment:
Q  486 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaa 552  Q
    |||||||||||||||||||| ||||  |||||||| |||   |||||||||| |||||| |||||||    
T  31954151 atcttaataatatacaaatgtgaagccacaaataggaaatttttttgcaccagtccaatatgtcaaa 31954085  T

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Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 490 - 574
Target Start/End: Original strand, 34024300 - 34024384
Alignment:
Q  490 taataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatctcac 574  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34024300 taataatatacaaatgggaagaaacaaatagcaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatgtcac 34024384  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 486 - 552
Target Start/End: Complemental strand, 12633121 - 12633055
Alignment:
Q  486 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaa 552  Q
    |||||||||||||||||||| ||||| |||||||| |||||| |||||  ||||| |||||||||||    
T  12633121 atcttaataatatacaaatgtgaagacacaaataggaaaaaaatttgcttcaatctaatgtgtcaaa 12633055  T

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Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 492 - 574
Target Start/End: Original strand, 34977280 - 34977362
Alignment:
Q  492 ataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatctcac 574  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34977280 ataatatacaaatgggaagaaacaaatagcaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatgtcac 34977362  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 486 - 552
Target Start/End: Original strand, 26125103 - 26125170
Alignment:
Q  486 atcttaataatatacaaatgggaagaaacaaatagtaaaa-aattttgcaccaatccaatgtgtcaaa 552  Q
    |||||||||||||||||||| ||||  |||||||| |||| |||||||| ||||||||||||||||||    
T  26125103 atcttaataatatacaaatgtgaagctacaaataggaaaaaaattttgccccaatccaatgtgtcaaa 26125170  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 486 - 552
Target Start/End: Original strand, 25571870 - 25571937
Alignment:
Q  486 atcttaataatatacaaatgggaagaaacaaata-gtaaaaaattttgcaccaatccaatgtgtcaaa 552  Q
    |||||||||||||||||||| ||||  ||||||| | |||||| ||||| ||||||||||||||||||    
T  25571870 atcttaataatatacaaatgtgaagctacaaataggaaaaaaaatttgccccaatccaatgtgtcaaa 25571937  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 486 - 552
Target Start/End: Original strand, 26006338 - 26006405
Alignment:
Q  486 atcttaataatatacaaatgggaagaaacaaata-gtaaaaaattttgcaccaatccaatgtgtcaaa 552  Q
    |||||||||||||||||||| ||||  ||||||| | |||||| ||||| ||||||||||||||||||    
T  26006338 atcttaataatatacaaatgtgaagctacaaataggaaaaaaaatttgccccaatccaatgtgtcaaa 26006405  T

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Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 486 - 569
Target Start/End: Original strand, 20087557 - 20087640
Alignment:
Q  486 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcat 569  Q
    |||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  20087557 atcttaataatatacaaatgtgaagaaacaaataggaaaaaaatttgcaccaatccaatgtgtcacatcctcaagcctcttcat 20087640  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 486 - 552
Target Start/End: Complemental strand, 45291743 - 45291677
Alignment:
Q  486 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaa 552  Q
    |||||||||||||||||||| ||||| |||||||| ||||||| ||||  |||||||||||||||||    
T  45291743 atcttaataatatacaaatgtgaagacacaaataggaaaaaatattgcttcaatccaatgtgtcaaa 45291677  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 486 - 552
Target Start/End: Original strand, 23362923 - 23362990
Alignment:
Q  486 atcttaataatatacaaatgggaagaaacaaata-gtaaaaaattttgcaccaatccaatgtgtcaaa 552  Q
    ||||||||||||||||||||  |||| ||||||| | ||||||  |||||||||||||||||||||||    
T  23362923 atcttaataatatacaaatgtaaagacacaaataggaaaaaaaaattgcaccaatccaatgtgtcaaa 23362990  T

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