View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_low_71 (Length: 206)
Name: NF2753_low_71
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 1524665 - 1524462
Alignment:
| Q |
1 |
tgagtttcatgggaatgagattagagaaaaagaatgtaagcatcgccgcttgatgatagaacaagcacttaaaccaaatacctagtttataaaaatgtct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1524665 |
tgagtttcatgggaatgagattagagaaaaagaatgtaagcatcgccgcttgatgatagaacaagcacttaaaccaaatacctagtttataaaaatgtct |
1524566 |
T |
|
| Q |
101 |
tgttaatttgcgttgcttcaagacaaattgcttatgttttcataattttaataactgtactagtatgttctcctttatgtacctatccttatcttatctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1524565 |
tgttaatttgcgttgcttcaagacaaattgcttatgttttcataattttaataactgtactagtatgttctcctttatgtacctatccttatcttatctc |
1524466 |
T |
|
| Q |
201 |
tgtg |
204 |
Q |
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|||| |
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| T |
1524465 |
tgtg |
1524462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 6e-76; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 2376143 - 2376346
Alignment:
| Q |
1 |
tgagtttcatgggaatgagattagagaaaaagaatgtaagcatcgccgcttgatgatagaacaagcacttaaaccaaatacctagtttataaaaatgtct |
100 |
Q |
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||||||||||| |||||||||||| ||| ||||| ||||||||| || |||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
2376143 |
tgagtttcatgtgaatgagattagggaagaagaacgtaagcatcaccccttgatgatagaactagcactgaaaccaaatacctagtttataaaaatgtct |
2376242 |
T |
|
| Q |
101 |
tgttaatttgcgttgcttcaagacaaattgcttatgttttcataattttaataactgtactagtatgttctcctttatgtacctatccttatcttatctc |
200 |
Q |
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| T |
2376243 |
tactaattttctttgcttcaagacaaattggttatgttttcttaattttaataactgtactagtatgttctcctttatgtacctatccttatcttttctc |
2376342 |
T |
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| Q |
201 |
tgtg |
204 |
Q |
| |
|
|||| |
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|
| T |
2376343 |
tgtg |
2376346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 2379928 - 2379739
Alignment:
| Q |
1 |
tgagtttcatgggaatgagattagagaaaaagaatgtaagcatcgccgcttgatgatagaacaagcacttaaaccaaatacctagtttataaaaatgtct |
100 |
Q |
| |
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||||||||||| |||||||||||| ||| ||||| ||||||||| || |||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
2379928 |
tgagtttcatgtgaatgagattagggaagaagaacgtaagcatcaccccttgatgatagaactagcactgaaaccaaatacctagtttataaaaatgtct |
2379829 |
T |
|
| Q |
101 |
tgttaatttgcgttgcttcaagacaaattgcttatgttttcataattttaataactgtactagtatgttctcctttatgtacctatcctt |
190 |
Q |
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| T |
2379828 |
tactaattttctttgcttcaagacaaattggttatgttttcttaattttaataactgtactagtatgttctcctttatgtacctatcctt |
2379739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 1164053 - 1164138
Alignment:
| Q |
94 |
aatgtcttgttaatttgcgttgcttcaagacaaattgcttatgttttcataattttaataactgtactagtatgttctcctttatg |
179 |
Q |
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|||||||| ||||| ||| |||||||||| ||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
1164053 |
aatgtcttattaatctgcactgcttcaagaaaaattgcctatgttttcataatgttaataactatactagtatgttctcctttatg |
1164138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 1163934 - 1163988
Alignment:
| Q |
1 |
tgagtttcatgggaatgag-attagagaaaaagaatgtaagcatcgccgcttgat |
54 |
Q |
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||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||| |
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| T |
1163934 |
tgagtttcatgggaatgagaattagggaaaaagaacttaagcatcgctgcttgat |
1163988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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