View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2753_low_72 (Length: 201)
Name: NF2753_low_72
Description: NF2753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2753_low_72 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 1e-67; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 42044700 - 42044837
Alignment:
| Q |
18 |
gaatcatggggtagtggtgttataatttcaaaatacatgaaaactaaaataatttgcaatctcatgaaggatcctacagcacttattaattcgttgtttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42044700 |
gaatcatggggtagtggtgttataatttcaaaatacatgaaagttaaaataatttgcaatctcatgaaggatcctacagcacttattaattcgttgtttc |
42044799 |
T |
|
| Q |
118 |
tcgtcattagttttgtcgcaccataaagctttttccat |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
42044800 |
tcgtcattagttttgtcgcaccataaagctttttccat |
42044837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 43204883 - 43205019
Alignment:
| Q |
18 |
gaatcatggggtagtggtgttataatttcaaaatacatgaaaactaaaataatttgcaatctcatgaaggatcctacagcacttattaattcgttgtttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
43204883 |
gaatcatggggtagtggtgttataatttcaaaatacatgaaagctaaaataatttgcaatttcatgaaggatcctacggcacttattaattcgttgtttc |
43204982 |
T |
|
| Q |
118 |
tcgtcattagttttgtcgcaccataaagctttttcca |
154 |
Q |
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|||| ||||||||||||| |||||||||||||||||| |
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| T |
43204983 |
tcgttattagttttgtcgtaccataaagctttttcca |
43205019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 54898033 - 54897899
Alignment:
| Q |
18 |
gaatcatggggtagtggtgttataatttcaaaatacatgaaaactaaaataatttgcaatctcatgaaggatcctacagcacttattaattcgttgtttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
54898033 |
gaatcatggggtagtggtgttataatttcaaaatacataaaagctaaaataatttgcaatctcatgaaggatcctacggcacttattaattcgttgttcc |
54897934 |
T |
|
| Q |
118 |
tcgtcattagttttgtcgcaccataaagctttttc |
152 |
Q |
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|||||||||||||||| |||||||||| ||||||| |
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| T |
54897933 |
tcgtcattagttttgttgcaccataaaactttttc |
54897899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 23 - 155
Target Start/End: Original strand, 33654129 - 33654261
Alignment:
| Q |
23 |
atggggtagtggtgttataatttcaaaatacatgaaaactaaaataatttgcaatctcatgaaggatcctacagcacttattaattcgttgtttctcgtc |
122 |
Q |
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|||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33654129 |
atggggtaatggtgttataatttcaaaatatatgaaagctaaaataatttgcaatctcatgaaggatcctatgacacttattaattcgttgtttctcgtc |
33654228 |
T |
|
| Q |
123 |
attagttttgtcgcaccataaagctttttccat |
155 |
Q |
| |
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||||||||||| ||||||||||||||||||||| |
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| T |
33654229 |
attagttttgttgcaccataaagctttttccat |
33654261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 16908165 - 16908029
Alignment:
| Q |
18 |
gaatcatggggtagtggtgttataatttcaaaatacatgaaaactaaaataatttgcaatctcatgaaggatcctacagcacttattaattcgttgtttc |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
16908165 |
gaatcatggggtagtggtgttataatttcaaaatacatgaaagctaaaataatttgcaatcttatgaaggatcctacggcacttattaattcgttgtttc |
16908066 |
T |
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| Q |
118 |
tcgtcattagttttgtcgcaccataaagctttttcca |
154 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |
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| T |
16908065 |
tcgtcattagttttgtcgcaccataaagctttttcca |
16908029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 5002219 - 5002347
Alignment:
| Q |
27 |
ggtagtggtgttataatttcaaaatacatgaaaactaaaataatttgcaatctcatgaaggatcctacagcacttattaattcgttgtttctcgtcatta |
126 |
Q |
| |
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||||||| | ||||| ||||| ||||||||||| ||||||| || |||||| ||||| ||||||| | ||||||||||||||||||||| | |
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| T |
5002219 |
ggtagtgatattatattttcagaatacatgaaagtcaaaataaattacaatctaatgaaagatcctatggtgtctattaattcgttgtttctcgttggca |
5002318 |
T |
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| Q |
127 |
gttttgtcgcaccataaagctttttccat |
155 |
Q |
| |
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||||||||||||||| ||||||||||||| |
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| T |
5002319 |
gttttgtcgcaccatcaagctttttccat |
5002347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 42667952 - 42667817
Alignment:
| Q |
18 |
gaatcatggggtagtggtgttataatttcaaaatacatgaaaactaaaataatttgcaatctcatgaaggatcctacagcacttattaattcgttgtttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| |
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| T |
42667952 |
gaatcatggggtagtggtgttataatttcaaaatacatgaaagttaaaataatttgcaatctcatgaaggattctacggcatttattaattcgttgtttc |
42667853 |
T |
|
| Q |
118 |
tcgtcattagttttgtcgcaccataaagctttttcc |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
42667852 |
tcgtcattagttttgtcgcaccataaagctttttcc |
42667817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 29412145 - 29412280
Alignment:
| Q |
18 |
gaatcatggggtagtggtgttataatttcaaaatacatgaaaactaaaataatttgcaatctcatgaaggatcctacagcacttattaattcgttgtttc |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
29412145 |
gaatcatggagtagtggtgttataatttcaaaatacattaaagctaaaataatttgcaatctcatgaaggatcctaaggcgcttattaattcgttgtttc |
29412244 |
T |
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| Q |
118 |
tcgtcattagttttgtcgcaccataaagctttttcc |
153 |
Q |
| |
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||||||||||||||| ||||||||||| |||||||| |
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| T |
29412245 |
tcgtcattagttttgccgcaccataaaactttttcc |
29412280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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