View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2754_high_15 (Length: 220)
Name: NF2754_high_15
Description: NF2754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2754_high_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 84 - 201
Target Start/End: Complemental strand, 12802096 - 12801979
Alignment:
| Q |
84 |
tcctaggcatgatcgaaattaaggtgaaacattcgaagcctgtgactggaatttgcatttatctatgaaaaacccgtaatttctagcatctagaaaatca |
183 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12802096 |
tcctagacatgatcgaaattaaggtgaaacattcgaagcatgtgactggaatttgcatttatctaagaaaaacccgtaatttctagcatctagaaaatca |
12801997 |
T |
|
| Q |
184 |
atcatttaaccaagtact |
201 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
12801996 |
atcattttaccaagtact |
12801979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 12802202 - 12802128
Alignment:
| Q |
14 |
aagaatatgggcaaggaaaaaactcaagatgtcttaaagaaaataatgggcctcaaatatctatgcaaaatccta |
88 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12802202 |
aagaaaatgggcaaggaaaaaactcaagatgtcttaaagaaaataatgggccacaaatatctatgcaaaatccta |
12802128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University