View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2754_high_3 (Length: 459)
Name: NF2754_high_3
Description: NF2754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2754_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 15 - 441
Target Start/End: Original strand, 11088965 - 11089391
Alignment:
| Q |
15 |
gaagtggacaaattgaataataatattttaattttttgatcaccaatcatgttcttccatgtgagtagagtttagagattgatggttccttaaaacacat |
114 |
Q |
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| T |
11088965 |
gaagtggacaaattgaatactaatattttaatttcttgatcaccaatcatgttcatccatgtgagtagagtttagagattgatggttccttaaaacacat |
11089064 |
T |
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| Q |
115 |
gcaagaggataattaaacttttcagatttaaatgataaggcagaattaattttctattaggaaacttcttcacnnnnnnnnnnnnntctattgggaaaat |
214 |
Q |
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| T |
11089065 |
gcaagaggataattaaacttttcagatttaaatgataaggcagaattaattttctattagcaaacttcttcacaaaaaaataaaaaactattgggaaaat |
11089164 |
T |
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| Q |
215 |
atcatttcatataaaagattttttgtagacagtcctctggagtaaagaacagagttggggtccttaattgaggttgtatcagctgcaagaggaaaatatt |
314 |
Q |
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| T |
11089165 |
atcatttcatataaaagtttttttgtacacagtccaggggagtaaagaacagagttggggtccttaattgaggttgtatcagctgcaagaggaaaatatt |
11089264 |
T |
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| Q |
315 |
acagaacaatgttaggattcaaatatacaaaaatgttcttataattctaaaagaaacgaaccatgcttctaattatttaaaaagaaagaactaaaacagt |
414 |
Q |
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| T |
11089265 |
acagaacaatgttaggattcaactatacaaaaatgttcttataattctaaaagaaaccaaccatgcttctaattatttaaaaagaaagaactaaaacagt |
11089364 |
T |
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| Q |
415 |
ttctagactctgagggtccgtttgatg |
441 |
Q |
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| T |
11089365 |
ttctagactctgagggttcgtttgatg |
11089391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 406 - 441
Target Start/End: Original strand, 11089447 - 11089482
Alignment:
| Q |
406 |
taaaacagtttctagactctgagggtccgtttgatg |
441 |
Q |
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| T |
11089447 |
taaaacagtttctagactctgagggtccgtttgatg |
11089482 |
T |
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